| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0482 |
|---|
| Symbol | |
|---|
| ID | 6205102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 568452 |
|---|
| End bp | 568940 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641690104 |
|---|
| Product | NADH-quinone oxidoreductase, E subunit |
|---|
| Protein accession | YP_001817372 |
|---|
| Protein GI | 182412306 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit |
|---|
| TIGRFAM ID | [TIGR01958] NADH-quinone oxidoreductase, E subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.220464 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTCA AGCCGGAAAC TCTCCAGAAA ATCGACGAGG TAATCACGCA TTACCCGACG
AAACGGAGCG CCACGCTGCC GCTGCTGCAC CTCATCCAAG AGGACATCGG CTACATTCCC
GCGGAAGCGC ACGAGTGGAT CGCGGCGAAG CTCGAGATTC AGCCGATCAA CGTTTACGAG
GTCGTGACGT TTTACCCGAT GTTCCGGCAG AAGCCGATCG GCCGCCGCCA CGTGAAGGTG
TGCCGCACGC TCTCGTGCGC GCTGCGCGGC GGCTACAAGG TCTGCGAGCA GTTTGAGAAA
GAATTCAACA CCAAGACCGG CGAGATCTCG CCCGACGGCG AGGTGACGGT CGAGTTCGTC
GAGTGTCTCG CCAGCTGCGG CACCGCGCCC GTTGTGATGA TCGACGACGA TCTCCACGAG
AACGTCGACG CCGCGAAGGC CAAGCAGCTC GCCGAGCAAA TCAAAGCCGA AGCCGCGAAG
CGGCGGTGA
|
|---|
| Protein sequence | MNLKPETLQK IDEVITHYPT KRSATLPLLH LIQEDIGYIP AEAHEWIAAK LEIQPINVYE
VVTFYPMFRQ KPIGRRHVKV CRTLSCALRG GYKVCEQFEK EFNTKTGEIS PDGEVTVEFV
ECLASCGTAP VVMIDDDLHE NVDAAKAKQL AEQIKAEAAK RR
|
|---|
| |