| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_33799 |
|---|
| Symbol | |
|---|
| ID | 5000886 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009357 |
|---|
| Strand | + |
|---|
| Start bp | 76413 |
|---|
| End bp | 78134 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | 640416307 |
|---|
| Product | BCCT family transporter: glycine betaine/carnitine/choline |
|---|
| Protein accession | XP_001416550 |
|---|
| Protein GI | 145344046 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGA CGACGCTGTG GGGATTCACG ATCGGCGTGT TGTCTCGTGA AGAGGCGGCG
GAGGAATTTT TCGGCAAGGC GACGCTTTGG ATTTCCAACA ACTTTACGTG GTTTTACACC
TTGACGCAGA ACGCGTGGAT TTTCGTGGTG ATTTTCGTGC TGTTTCGGAA AAGGTACGCA
AACATCAAGC TCGGACAGCC GGATGATAGG CCTGATTATT CCGATCTCGT GTGGTTCACG
TTGATTTTCA CCACGGGGCT CGGGACGGGG ATATTTTACT TTGGAGTGAG CGAGCCGATG
TACTACTATC GTGATGATTC CAAACTTTTA GGAACAGCAA CCAACTATAT AGCGAAGATC
CCGTTCATGA ACGATGATCA AAGGGCGAAC ATGGCGATGT TTGTCACTTT TTTGCATTGG
GGTTTGCACG GTTGGGCGAC GTACATCTTG GTCGCGCTGA CGCTCGGCGT CGTGCATTAC
CGACTGGGCA GGCCGCTGAC GCTTCGCAGT GCGTTTTATC CCATCGTAGG CGATTACGTC
AACGGGCTGT TCGGCGACTT GATTGACTCG ATGTCCATCG CTTGTACGAC GTTTGGGTTG
TGCACGTCGC TCGGTTTGGG GGCGAGCAGT ATCAATACCA TCTTGCACCG CATGAGCGCT
TCGATTCCTG ACGACGACGA CAACACGAAG TCGGCCATCA TTTGGGGCAT CACCGCGCTC
ACTACGGGTG CACTCGTAAG CGGGCTCCAC CGCGGGGTTA TCACTTTCGC CATTGTCGCC
TTCTCAATTC TACTTGCGCT GATTATGATT TTGTTCATGC TTGACAACAC GTGGTACCTT
GCAAATTCGT TTACGCAGCA AATCGGAACA TACTTGCAGT ACGTGATTCT CGGCGGATTC
GACAATGACG CCATAGCGCA GCTGAACATA GAGTTTACGC AGAACGACAC GCACTTGTGG
GGTGCGCAAG GGATAAAACA ATTAGTGGAA ACGGCCTTGA ACAAGACGCT TGCCGATCCG
ACGACGTATT ACTCGAGCTC GCCGACTTCG TTCATGGATA CGTGGACGGT ATTTTACTGG
GCTTGGTGGA TCACTTGGGC GCCGTTCGTA GGAATGTTTT ACGCTAAAAT TTCACGTGGT
CGCACCATAA GATCGCTTAT TCTGGTCGGT ATGTTTGCGC CGATGTTTTT GGGTTTCTTT
GCTATTTCCG TCCTCGGATC GCTTGGTATT CGAATGCAAC GCATCGCGGA ATTGGCGCTC
GGCGCTGCAC CAGATTGGCA GAAAGGAGTT GTGAACTGCG GTGCCCTCGG GTATTTAGAA
AACACACCCG TGAGTGCGGA CGCAAAAAAG TTGGCCTCGG AGCTCGGAGT CTACGCCTTG
GCGTGTCGAA AATCGACGGA TAGAATTTTG GACATTCTTG AGCCTTACAA AAACTTGACG
ACGCTTTTAC AAACCTTAGT TCTTTTGGGT GTGATTTTGT TCTTCGTCAC CTCTGCGGAT
GCGGGCGCGT TCGTGGACGA CAAAATCGCC GCGAACGGCA TGGAAAATCC TCCTGTTCTT
CAAAAGGTGT GGTGGAGCAT CACGCAAGGC GCCACCGCGC AGGCGTTGCT AAGCTCCACT
AAAAACGGTT TGTCCACGCT TCAATCGGTG AGCATTTGTG CCGCTCTGCC GTACACGTTC
GCGCTGAATT ACATGTGTGT AGCACTCTTT CGCGCTATGG AC
|
|---|
| Protein sequence | MATTTLWGFT IGVLSREEAA EEFFGKATLW ISNNFTWFYT LTQNAWIFVV IFVLFRKRYA
NIKLGQPDDR PDYSDLVWFT LIFTTGLGTG IFYFGVSEPM YYYRDDSKLL GTATNYIAKI
PFMNDDQRAN MAMFVTFLHW GLHGWATYIL VALTLGVVHY RLGRPLTLRS AFYPIVGDYV
NGLFGDLIDS MSIACTTFGL CTSLGLGASS INTILHRMSA SIPDDDDNTK SAIIWGITAL
TTGALVSGLH RGVITFAIVA FSILLALIMI LFMLDNTWYL ANSFTQQIGT YLQYVILGGF
DNDAIAQLNI DSPTSFMDTW TVFYWAWWIT WAPFVGMFYA KISRGRTIRS LILVGMFAPM
FLGFFAISVL GSLGIRMQRI AELALGAAPD WQKGVVNCGA LGYLENTPPY KNLTTLLQTL
VLLGVILFFV TSADAGAFVD DKIAANGMEN PPVLQKVWWS ITQGATAQAL LSSTKNGLST
LQSVSICAAL PYTFALNYMC VALFRAMD
|
|---|
| |