Gene OSTLU_14940 details

Gene Information

• Locus tag: OSTLU_14940
• Symbol: PAFC3501
• ID: 5001313
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Ostreococcus lucimarinus CCE9901
• Kingdom: Eukaryota
• Replicon accession: NC_009358
• Strand: +
• Start bp: 216029
• End bp: 219379
• Gene Length: 3351 bp
• Protein Length: 1059 aa
• GC content: 59%
• IMG OID: 640416734
• Product: predicted protein
• Protein accession: XP_001417181
• Protein GI: 145345359
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3063] Tfp pilus assembly protein PilF

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0306125
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGCCGC GAAACGCGGT CGCCGTCGCG CTGCTGAACG ACCCGAACGA ATGCGTCGTC 
GTCGACCTCG ACGCGCTGCC GACGGACGTC GAGGACGTCG CGAGCGTCCT CCAGGCGGAG 
CTCGCGCCGC TCGAGGCGTG GATCGAGGTG ACGGAGGCGT ACCTCAGGCG AGGCGACGCG 
CGAGGGTTCG AGACGCTGAT GGAGATGGTG TGCGCGCCGG GTGCGTGGAC GCGCGCGCCG 
CGACCGACGG GACGCGACGC GCGCGCGAAC GAACGAACGA ACGAACGAAA GCGCGCGAAC 
GTTTGCGCGA TCGAGCGATG ATGGATCGAC GGGCTCAACG GCGTCGACCG AACGCGGTGA 
CTGACGAGAC CGCGCGCGCG GACGACGATA GAGATCGAGG AGGTGTATAG GGAACAAGCG 
TACGGACGCG CGGCGGTGCT GTGCCTGTAC GCGTCGTATT GGGCGAATAG GGCGGCGCGG 
GAGACGGACG CGGTGAGCCG AGAGGAGGGG TTCATCAAGG CGGGCGCGTA CTTGAATCAA 
GCGGCGGGAA TTCACAGGAA ACCGGAACAG ATCGTGGCGA TCGGACGCGC GCACCTGGCG 
TTCGCGCGCG GGGCGACGGG AGAGGGCGAG AAACTCATCG ACCAGGCGCT CGGGCTCAAG 
GACGACGGTA GGGATAACAT CACGCCGATG CTGTGGAAGG CGGTTTTATT GTATAAGAAG 
GAGCGCTACC AAGACGCGTT GACGTGGTAC AAACGCGCAC TTCGCGCGTT TCCTTCCGCG 
CCCGCACCGG TGCGTTTGGG GATCGGGGCG TGCCAATACA AGCTGGGCGA CTTCAAGACG 
GCGAAGCTTG CGTTTGCGCG CGTGCTCAAG TTGGATGAGC GCAACGTCGA AGCCATGCTC 
GGTTTGGCGC TGTGCGAATT GAGCTTGCAT GACATTCGTA GTCAGCAACA CTTGGATTCC 
GTAGCTGCGG CCATGCGCCT GCTCGAGCGC GCTTTCATGC ACGACCCTCA CAACCAAGCG 
GTGAACAACG TCATCTCGGA CAATTTGCTC ATGGCGGATG ATTACGAAAA AGTAGAGAAA 
CTCACGCGAC TGGCGCTTCA GAACAACGCG GAGACGCCGA GGAACCGAGC GAAGGCGGCG 
TTTAACCAAG CGCGCGCCTT GCACGCCCGA GGACAGGTGC CTCAAGCGCA AGCGTTGTAC 
TTGACGGCGA CGAACCTCGA CGAACACTAC GTGCCGCCGT ACTTTGGTTT GGGTCAAATC 
GCCCTTGCAA AGGGTGATGT GAAGTTAGCG TGGAACTACA TGGATAAAGC ACACGGGGAA 
TTCGGAGAGT CCATGACCGT GACTAGAATG TTTGCCCATT TATGCGCGTC GACTGGTAGA 
AGCGAGCAGG CGGCGGAGAT GTTCCGCGAA GTAGTGAAAC AGGGTGGAAA CGACGTCGAC 
GCGATGTTAG AACTCGGAGA ACTCTTAGAG ACTCAAGATC CGAAGGCTGC GTTGAAGGCT 
TACAGTGCCG CCCTGAAAAT GCTAGCTGCC AAGGGTGAAG AAGGGCCAAT TACCGCCATC 
AAGAACAACA TCGGCGTGTT GAACGTTCAG TTGGGCAAAT TCGACGAGGC GCGCGAGGCG 
TTCACCGAGG CGCTGCAGGC GCTCGGTGGC GATGCCGATC AACTCGAGGG CAAACTGAAA 
GGTGCTAAGG CGAAGAAGGC GTTACAGCCA GGCGTTGCGC CCATCGCGTT CAACTTGGCT 
TTATTAGAGG AACAGCAAGG AAACAACGCC GCGGCGGAGG CACGATACGA CGCCATCCTC 
GCCGCGCAAC CGGATTACAT TGATTCCATC TTGCGTCAAG CGAAAATTCG GGCCGAACGG 
GGCGATTACG ACATGGCGCT CGAACGCACG AATGAAGCCA TTGCGGCGAA AAGTGATAGT 
GCCGATGCCC TCGCCCTCGC TGGTTGGGTT TTGCTCAAGG CAAAGCGATG GAGTGAGGCG 
GAGCAACAAT TCGCCGCGCT GCGCAACTTG CCCAAACCCG ACGCCGCGGC GAATGCGAAG 
GAAAAAACAT TGACGCACGA CGAGTATGCG ATGGTAAGCG CGGCGAACGC GGCGTATTAC 
AGCGCTATCA AAGAGGGTGT GCTCAAGCGA AACGATCCCA AGGTGCTCAA GCGCGAGGAG 
GAGCACTACG AACGGGCTTA CTCGTTGTTC CAAAAGACGC TCCAGAAGAA TGGTTCCAAC 
GTCTACGCCG CTAATGGTCT CGGGATTATT CTTGCTGAGC GAGGGCGAAT CGACGAAGCC 
AAGACGGTGT TTCAGATCGT GCAAGAAGGC ATGGCTGCGA AAGGCTCAAT CAACCCGGAT 
ATTCTCATCA ACCAAGGTCA CGTGTACTTG GCCAAGGCGC AATATGTGCA GGCGAGCAAG 
CTTTACGAGC GCGCTCAAAG CCAGTTCTAC TTTAACCAGA ACGAAAATGT CATGCTTTAT 
CAAGCGAGGG CGCATTATGA GAATGGCAAC TTGGAAGAAG CGCGCAAGAT TCTTCGCAAA 
GCGTTGTTAA TCGCGCCCTG GAACCACAGA ATTCGATTCA ACTTGGCGTA CGTCATTCAA 
GAGATGGCGC AGCGCACGTT GAACAGAACG ATGAAGAGCA CGAGCTCGGA CGGACGTTTG 
GCGCAAGTGG AAAGTGCGAT AGAAGACTTG ACCACTGCGC TCAAGCTCTT CGAGCAATTG 
CAAACGCTTG GGAACCAGGC GGAGTTTGGT TTCGACGCCA AACGCACGAG CGTTCACGTG 
TCCTTCTGCA AGCAAGCGCT CACCAAGTCC AAACCGCACT TGGAAGCGGC GCAGAAGGAA 
GAGGCTTCGA TCTCTGCAGC GAAAAACGCG CAACTCACCG CGCGCCGCGC GATCGAAGAA 
GGCCGCGCCG CCCAAAAAGC TGCCGAAGAA CTCGCCAAGG AGACGCACGC CAAGGAACTC 
GAAGCCATCG CTGCGCAGTC TGAGCGTCGC TTCAAAGAAA GCCAAGCGCG ATGGATGTCA 
GAACAAGCTG TCGAGCGACC GACGAAGAAA GGTGCCAAGG GTCTCGGTGC GGCTCCTGTC 
GGTGAGGCCA CGAGCGATCT TTCCGAAGAC GATGACGAGC CCGCACCCGA GACGCGCGCG 
CCGCCCACTG CCGAGGAACT CGCGCGTCAG AAAGAAGCCC TCGCGGCGGC CGGTTTAGCC 
GACAGCGACG ACGAAGACGA AGACGAAGAC GAAGACGCGC AACCGAGCGC CGACGTCGAA 
GCACCGGCAG AAAAGAAGCG TTCCGCTGAC GAAACTGACG AAGCCCAAGC TGAAGCCGCC 
GCTCCCAAGC GTCGCCGACG CGCCGTCGTC GACGACGACG ACGACGAGTG A 

 

Protein sequence

MSPRNAVAVA LLNDPNECVV VDLDALPTDV EDVASVLQAE LAPLEAWIEV TEAYLRRGDA 
RGFETLMEMV CAPEIEEVYR EQAYGRAAVL CLYASYWANR AARETDAVSR EEGFIKAGAY 
LNQAAGIHRK PEQIVAIGRA HLAFARGATG EGEKLIDQAL GLKDDGRDNI TPMLWKAVLL 
YKKERYQDAL TWYKRALRAF PSAPAPVRLG IGACQYKLGD FKTAKLAFAR VLKLDERNVE 
AMLGLALCEL SLHDIRSQQH LDSVAAAMRL LERAFMHDPH NQAVNNVISD NLLMADDYEK 
VEKLTRLALQ NNAETPRNRA KAAFNQARAL HARGQVPQAQ ALYLTATNLD EHYVPPYFGL 
GQIALAKGDV KLAWNYMDKA HGEFGESMTV TRMFAHLCAS TGRSEQAAEM FREVVKQGGN 
DVDAMLELGE LLETQDPKAA LKAYSAALKM LAAKGEEGPI TAIKNNIGVL NVQLGKFDEA 
REAFTEALQA LGGDADQLEG KLKGAKAKKA LQPGVAPIAF NLALLEEQQG NNAAAEARYD 
AILAAQPDYI DSILRQAKIR AERGDYDMAL ERTNEAIAAK SDSADALALA GWVLLKAKRW 
SEAEQQFAAL RNLPKPDAAA NAKEKTLTHD EYAMVSAANA AYYSAIKEGV LKRNDPKVLK 
REEEHYERAY SLFQKTLQKN GSNVYAANGL GIILAERGRI DEAKTVFQIV QEGMAAKGSI 
NPDILINQGH VYLAKAQYVQ ASKLYERAQS QFYFNQNENV MLYQARAHYE NGNLEEARKI 
LRKALLIAPW NHRIRFNLAY VIQEMAQRTL NRTMKSTSSD GRLAQVESAI EDLTTALKLF 
EQLQTLGNQA EFGFDAKRTS VHVSFCKQAL TKSKPHLEAA QKEEASISAA KNAQLTARRA 
IEEGRAAQKA AEELAKETHA KELEAIAAQS ERRFKESQAR WMSEQAVERP TKKGAKGLGA 
APVGEATSDL SEDDDEPAPE TRAPPTAEEL ARQKEALAAA GLADSDDEDE DEDEDAQPSA 
DVEAPAEKKR SADETDEAQA EAAAPKRRRR AVVDDDDDE