| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OEOE_1267 |
|---|
| Symbol | |
|---|
| ID | 4415458 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Oenococcus oeni PSU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008528 |
|---|
| Strand | - |
|---|
| Start bp | 1181315 |
|---|
| End bp | 1182829 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 639669448 |
|---|
| Product | peptide chain release factor 3 |
|---|
| Protein accession | YP_810805 |
|---|
| Protein GI | 116491261 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4108] Peptide chain release factor RF-3 |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.551841 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAATT TTAAAGAAGA ATACAAAAAA CGTGTCACTT TTGCAATCAT TTCGCATCCT
GATGCCGGTA AAACAACTTT GACCGAACAA CTCCTGTTAC ACGGCGGCGT TATCAGAAAA
GCTGGTACAG TCAAAGGTCG TGGATCGAAT AAAATGGCCT CCTCGGATTG GATGGCAATT
GAACAGCAGC GAGGTATTTC CGTTACTTCG TCTGTTTTGC AGTTCAATTA TGCCGGCAAA
AGGATTAATA TCCTTGATAC CCCAGGCCAC GAGGATTTCT CAGAAGATAC TTATCGTACT
TTAATGGCGG TTGATTCGGC AGTAATGGTG ATTGATTCGG CAAAGGGAAT CGAACCTCAG
ACAAGGAAAT TGTTTGAAAT AGTTTCAAAG CGCCATATCC CGATTTTTAC TTTTTTTAAT
AAATTGGATC GTGATGGTCG TCAAGCGCTT GATTTGGTTG ATGAATTAGA AAAAACACTT
GGCATTCAAG CCTATGCTAT GAATTGGCCG ATTGGTTCCG GCCAGGTTTT ACAGGGAATT
TACGATTTAC AACGGAACAA GTTTATTCAA TATGATAATG TGAAAAATCC CGATCAATCT
GTTTATAACG AATCAATGGA AGAGATCGAG CTTTTAAAGG ATGCCGGTAA TCAATTAGAT
GAGGACAAAG TCCTTCGGGG TGCTCAAACA CCAGTCTTCT TTGGGTCGGC TTTAAGTAAT
TTTGGAGTTG AGCAGTTTTT GACTGAGTAT TTAAAATATG CCCCCTCGCC ATCGGACAAG
GCCACGATTG ATCATAAAGA GGTTCAACCG GATAACGACC AATTCACGGG ATTTATTTTT
AAAATTCAAG CGAACATGAA TCCTAATCAT CGTGATCGGA TTGCTTTTGT CAGAATCGTT
TCCGGGGAGT TTAAAAAAGG GATGGATGTG ACGCTTGCCA GAAATGGAAA AAAATTGAAG
CTCAGCAACG TTACTCAATT CTTGGCTGAT GAACGTGAAA ATATTGAAAC AGCTGTTCCA
GGAGATATTA TCGGCCTTTA CGATACCGGT AACTTTCAAA TTGGTGATTC AATCTATACT
GGTAAACAGA AAGTCGAATT TGAACCATTA CCGACATTTA CTCCGGAACT TTTTAATCGG
GTAATCGCCA AAGACGTTAT GAAACAAAAA TCTTATCATA AGGGTATTAG GCAATTGGTT
CAGGAAGGGA CTGTCCAATT ATTCGAGTCG TGGCATGGCC AAGAATATAT CATTGGGGCG
GTTGGCCAGC TTCAATTCGA AGTATTCCAG TTCAGAATGG CTAATGAATA TAATTCTCAA
GTTATTTTCG AACCGCTTGG TAAAAAGATC GCTCGCTGGA TCAAACCGGA TCAGTTGGAT
GAAAAAATGA ATACCTCGCG TTCGATACTG ATGAAAGATC AACAAGACAA CCCGGTTATA
TTGTTTGAGA ATCGTTTTGC TCTGAATTGG TTTGTCGATA AGTATCCTGA TATTGATTTG
GAATCAAAAC TTTAG
|
|---|
| Protein sequence | MTNFKEEYKK RVTFAIISHP DAGKTTLTEQ LLLHGGVIRK AGTVKGRGSN KMASSDWMAI
EQQRGISVTS SVLQFNYAGK RINILDTPGH EDFSEDTYRT LMAVDSAVMV IDSAKGIEPQ
TRKLFEIVSK RHIPIFTFFN KLDRDGRQAL DLVDELEKTL GIQAYAMNWP IGSGQVLQGI
YDLQRNKFIQ YDNVKNPDQS VYNESMEEIE LLKDAGNQLD EDKVLRGAQT PVFFGSALSN
FGVEQFLTEY LKYAPSPSDK ATIDHKEVQP DNDQFTGFIF KIQANMNPNH RDRIAFVRIV
SGEFKKGMDV TLARNGKKLK LSNVTQFLAD ERENIETAVP GDIIGLYDTG NFQIGDSIYT
GKQKVEFEPL PTFTPELFNR VIAKDVMKQK SYHKGIRQLV QEGTVQLFES WHGQEYIIGA
VGQLQFEVFQ FRMANEYNSQ VIFEPLGKKI ARWIKPDQLD EKMNTSRSIL MKDQQDNPVI
LFENRFALNW FVDKYPDIDL ESKL
|
|---|
| |