| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_1350 |
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| Symbol | rpoB |
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| ID | 3675767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter winogradskyi Nb-255 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007406 |
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| Strand | + |
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| Start bp | 1480397 |
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| End bp | 1484539 |
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| Gene Length | 4143 bp |
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| Protein Length | 1380 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637712901 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_317963 |
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| Protein GI | 75675542 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0511813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.845887 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGCAGC AGACGTTCAC CGGTCGCAAG CGGGTTCGCA AGTTCTTTGG ACATATCCGT
GAAGTCGCGG AGATGCCGAA CCTGATCGAG GTGCAGAAAG CCTCCTACGA TCAGTTTTTG
ATGGTTGACG AGCCGGAAGG CGGCCGCCTG GACGAGGGTT TGCAGGCGGT TTTCAAATCA
GTGTTTCCGA TCAACGACTT CTCCGGCGCT TCGCAACTCG AATTCGTGCG CTATGAGTTC
GAGGCTCCGA AATACGATGT CGACGAATGC CGCCAGCGCG GCATGACCTA TGCCGCTCCG
CTGAAGGTGA CGCTGCGCCT GATCGTATTC GATATCGACG AGGAGACCGG CGCGAAGTCC
GTGAAGGACA TCAAGGAGCA GGACGTCTAC ATGGGCGACA TTCCGCTCAT GACGATGAAC
GGCACCTTCG TCGTCAACGG CACCGAGCGC GTCATCGTCT CGCAGATGCA TCGTTCGCCT
GGCGTGTTCT TCGATCACGA CAAGGGCAAG ACTCATTCGT CAGGCAAGCT GCTGTTCGCC
GCGCGCGTGA TTCCGTATCG CGGGTCGTGG CTCGACATCG AGTTCGACGC CAAGGACATC
GTGTTCGCGC GCATCGACCG TCGCCGCAAG ATTCCGGTGA CGTCGCTGAT GTTCGCCCTC
GGCCTCGACG GCGAGGAAAT CCTCAGCACG TTCTACAAGA AGATCATCTA CAAGCGCGCG
AAGTCCGGCG GTGGTTCGGA CGGCTGGCGC GTGCCCTATG ATCCGGTCCG TTTCCGCGGC
TACTCGACGC TGAACGACCT GATCGACGCT GACACCGGCA AGGTCGTGCT CGAGGCCGGC
AAGAAATTGA CGGTTCGCGC CGCGCGCCAG CTTCAGGAGA AGGGGCTGAA GGCGCTGCGC
ATGAGCGACG AGGAACTCGT CGGCATGTAT CTGGCCGAAG ACCTCGTCAA TCCGAAGACC
GGCGAGATCT ATGCCGAAGC CGGCGAGGAG ATTACCGAGA AGTCGCTGAA GGCGCTCAAC
GAGGAGGGGT ACAAGGAGCT GCCGCTGCTC GACATCGACC ACGTCAATGT CGGCCCCTAC
ATTCGCAACA CGCTGGCCGC CGACAAGAAC ATGACGCGCG AGGACGCGCT GTTCGACATC
TACCGGGTGA TGCGTCCGGG CGAGCCGCCG ACGCTGGAGT CGGCGCAAAA CATGTTCCAG
TCGCTGTTCT TCGATGCCGA GCGCTACGAC CTGTCCGCTG TCGGCCGCGT CAAGATGAAC
ATGCGCCTCG ACCTCGATGC GCCGGACACC TATCGCACGC TCCGCAAGGA GGACATCCTT
GCGGTCATCA AGACGCTGGT CGACCTGCGC GACGGCAAGG GAGAGATCGA CGACATCGAC
CACCTCGGCA ATCGGCGCGT GCGCTCGGTC GGCGAACTGA TGGAAAACCA GTACCGCGTC
GGTCTGTTGC GCATGGAGCG GGCCATCAAG GAGCGGATGT CCTCCGTCGA CATCGACACC
GTGATGCCGC AGGATCTGAT TAACGCGAAG CCCGCGGCTG CCGCGGTGCG CGAGTTCTTC
GGGTCGTCGC AACTCTCGCA GTTCATGGAT CAGACCAACC CGCTTTCGGA GATCACCCAC
AAGCGCCGCC TGTCGGCGCT TGGGCCGGGC GGCCTGACGC GCGAACGCGC AGGCTTCGAG
GTGCGCGACG TGCATCCGAC CCACTACGGC CGCATCTGTC CGATCGAGAC GCCGGAAGGC
CCGAACATCG GCCTCATCAA CTCGCTCGCG ACGTTCGCGC GCGTCAACAA ATACGGTTTC
GTCGAGACGC CGTACCGCAA GGTGAAGGAC GGCCGCGTCA CCGACGAGGT GGTCTATCTC
TCCGCGATGG AGGAAGGGCG CTATCACGTC GCGCAGGCCA ACCTGCCGCT CGACGCCCGT
GGCCGCTTCA CCGAGGATCT CGTGGTCTGC CGTCATGCCG GCGAGGTGCT GCCGGTGACG
CCGGACAAGG TCGACTTCAT GGACGTGTCG CCCAAGCAGC TCGTCTCGGT CGCGGCGGCT
TTGATCCCGT TCCTGGAGAA TGACGACGCC AACCGCGCGC TGATGGGCTC GAACATGCAG
CGACAGGCGG TGCCGCTGGT GCGCGCCGAG GCGCCGTTCG TCGGCACCGG CATGGAAGGC
GTGGTCGCGC GCGACTCGGG CGCGGCGATC GCCGCCCGCC GCTCCGGCGT GATCGACCAG
ATCGACGCCA CCCGCGTCGT CATCCGCGCG ACGGAAGATC TCGATCCGAC CAAGTCCGGC
GTCGATATCT ATCGCCTCAT GAAGTACCAG CGCTCGAACC AGTCGACCTG CATCAACCAG
CGTCCGCTGG TGAAGGTCGG CGATATCGTC AGGAAGGGCG ACATCATCGC GGACGGCCCG
TCCACCGATC TCGGCGAACT CGCGCTCGGC CGCAACGTGC TGGTCGCGTT CATGCCGTGG
AACGGCTACA ACTTCGAAGA CTCGATCCTG CTCTCGGAGC GGATCGTCAA GGAAGATGTT
TTCACCTCGA TCCATATCGA GGAATTCGAA GTGATGGCCC GTGACACCAA GCTGGGCCCT
GAGGAAATCA CGCGCGACAT TCCGAACGTT TCGGAAGAGG CGCTGAAGAG CCTCGACGAA
GCCGGCATCG TCTACATCGG CGCCGAGGTC CGCGCGGGCG ACATCCTCGT CGGCAAGATC
ACGCCGAAGG GCGAAAGCCC GATGACTCCG GAAGAAAAGC TGTTGCGCGC GATCTTCGGC
GAGAAGGCTT CCGACGTTCG CGACACCAGT CTGCGCGTGC CTCCGGGCGT GCAGGGCACC
ATCGTCGAAG TCCGCGTCTT TAACCGTCAC GGCGTCGACA AGGACGAGCG TGCGCTGGCG
ATCGAGCGGG AGGAGATCGA GCGTCTCGCC AAGGATCGCG ACGACGAGCA GGCGATTCTC
GACCGCAACG TCTACGGCCG TCTCGCCGAT CTGCTCGAAA ACCGCCAGGG CATTGCCGGT
CCGAAGGGCT TCAAGAAGGA TACCAAGATC ACCAGGGCGG TGCTTGATGA GTACCCGAAG
TCGCAGTGGT GGCTGTTCGC ATCGCCGAAC GACAAGCTGA TGGCCGAGAT AGAGGCCATG
CGCAAGCAGT ACGACGAGTC GAAGAAGGGC CTCGAGCAGC GCTTCCTCGA CAAGGTTGAA
AAGCTGCAGC GCGGCGACGA GTTGCCGCCG GGCGTGATGA AGATGGTCAA GGTCTTCGTC
GCCGTGAAGC GCAAGATCCA GCCGGGCGAC AAGATGGCTG GCCGTCATGG CAACAAGGGC
GTGGTTTCGA AGATCGTTCC GATCGAGGAT ATGCCGTTCC TTGAGGATGG CACCCACGCC
GACATCGTTC TCAACCCGCT CGGCGTGCCC TCGCGCATGA ACGTCGGTCA GATTCTCGAA
ACCCACCTCG GCTGGGCATG TGCCGGCCTT GGCAGGCGGA TCGGGCAGGC CGTCGACGCC
TACCTCGCGA GCGCGAAGCA GGAAACCAAG CCGCTGAAAG AAACCCTGAA GAAGGTCTAC
GGCGACAACG AGACCATCAA GTCGCTTGAG GATCATGAGC TTGTCGAGCT CGGCCGCAAT
TTGAGACGCG GCGTTCCGAT CGCGACGCCG GTGTTCGATG GCGCCAAGGA AGCCGATATC
GAGCAGATGC TCGAACTTGC GGGCATGGAC AAGTCAGGCC AGTCGACGGT GTATGACGGG
CGGACCGGCG ACCCGTTCGA TCGCAAGGTC ACGGTGGGCT ACATCTACAT GCTCAAGCTG
CACCACCTTG TCGATGACAA GATCCACGCG CGCTCGATTG GACCTTACTC GCTCGTCACC
CAGCAGCCGC TGGGCGGCAA GGCGCAGTTC GGCGGCCAGC GTTTCGGCGA AATGGAGGTG
TGGGCGCTCG AGGCTTACGG TGCGGCTTAC ACGCTCCAGG AAATGCTGAC GGTGAAGTCG
GACGACGTCG CGGGCCGCAC CAAGGTCTAT GAGGCGATCG TGCGCGGCGA CGACACCTTC
GAGGCGGGCA TTCCGGAATC GTTCAACGTG CTGGTCAAGG AAATGCGCTC ACTGGGCCTG
AATGTCGATC TGCATAACTC CAAGATCGGC GACATGATGC CGACATCCGA AGCAGCCGAG
TAG
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| Protein sequence | MVQQTFTGRK RVRKFFGHIR EVAEMPNLIE VQKASYDQFL MVDEPEGGRL DEGLQAVFKS
VFPINDFSGA SQLEFVRYEF EAPKYDVDEC RQRGMTYAAP LKVTLRLIVF DIDEETGAKS
VKDIKEQDVY MGDIPLMTMN GTFVVNGTER VIVSQMHRSP GVFFDHDKGK THSSGKLLFA
ARVIPYRGSW LDIEFDAKDI VFARIDRRRK IPVTSLMFAL GLDGEEILST FYKKIIYKRA
KSGGGSDGWR VPYDPVRFRG YSTLNDLIDA DTGKVVLEAG KKLTVRAARQ LQEKGLKALR
MSDEELVGMY LAEDLVNPKT GEIYAEAGEE ITEKSLKALN EEGYKELPLL DIDHVNVGPY
IRNTLAADKN MTREDALFDI YRVMRPGEPP TLESAQNMFQ SLFFDAERYD LSAVGRVKMN
MRLDLDAPDT YRTLRKEDIL AVIKTLVDLR DGKGEIDDID HLGNRRVRSV GELMENQYRV
GLLRMERAIK ERMSSVDIDT VMPQDLINAK PAAAAVREFF GSSQLSQFMD QTNPLSEITH
KRRLSALGPG GLTRERAGFE VRDVHPTHYG RICPIETPEG PNIGLINSLA TFARVNKYGF
VETPYRKVKD GRVTDEVVYL SAMEEGRYHV AQANLPLDAR GRFTEDLVVC RHAGEVLPVT
PDKVDFMDVS PKQLVSVAAA LIPFLENDDA NRALMGSNMQ RQAVPLVRAE APFVGTGMEG
VVARDSGAAI AARRSGVIDQ IDATRVVIRA TEDLDPTKSG VDIYRLMKYQ RSNQSTCINQ
RPLVKVGDIV RKGDIIADGP STDLGELALG RNVLVAFMPW NGYNFEDSIL LSERIVKEDV
FTSIHIEEFE VMARDTKLGP EEITRDIPNV SEEALKSLDE AGIVYIGAEV RAGDILVGKI
TPKGESPMTP EEKLLRAIFG EKASDVRDTS LRVPPGVQGT IVEVRVFNRH GVDKDERALA
IEREEIERLA KDRDDEQAIL DRNVYGRLAD LLENRQGIAG PKGFKKDTKI TRAVLDEYPK
SQWWLFASPN DKLMAEIEAM RKQYDESKKG LEQRFLDKVE KLQRGDELPP GVMKMVKVFV
AVKRKIQPGD KMAGRHGNKG VVSKIVPIED MPFLEDGTHA DIVLNPLGVP SRMNVGQILE
THLGWACAGL GRRIGQAVDA YLASAKQETK PLKETLKKVY GDNETIKSLE DHELVELGRN
LRRGVPIATP VFDGAKEADI EQMLELAGMD KSGQSTVYDG RTGDPFDRKV TVGYIYMLKL
HHLVDDKIHA RSIGPYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS
DDVAGRTKVY EAIVRGDDTF EAGIPESFNV LVKEMRSLGL NVDLHNSKIG DMMPTSEAAE
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