| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nwi_0962 |
|---|
| Symbol | |
|---|
| ID | 3674979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter winogradskyi Nb-255 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007406 |
|---|
| Strand | + |
|---|
| Start bp | 1056343 |
|---|
| End bp | 1058349 |
|---|
| Gene Length | 2007 bp |
|---|
| Protein Length | 668 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637712511 |
|---|
| Product | type I secretion system ATPase, PrtD |
|---|
| Protein accession | YP_317576 |
|---|
| Protein GI | 75675155 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTGG ACGATAACAG AGGAAATTCC AATTCGTCCT CGGGTTCAGA AGATCGAGCC
GAACCTGTCA TCTCGCCGGC GGAGCGAGAT TCAAACGATC AGTCGGACCT CGCTTCGCCC
GTAAAGCCTT CCGAGACGCT TGATGGACGA GCGGAGGAAG TGTCACCTCC CGTCGCCGCG
GACGGCAAGG GAGCGGATGC GCCCTTGCCT ACTGCGGGTG GTGATCATCG TGGCGGAAAG
GGAAATCTGA ACGGCGGCGG CGGTCGTGGT CCACAGCTGC ACAAGCGCTC CGGCGACAAT
GAATTCCGCG ATGTTCTCGG CAAGGGATTG GCGGCCGCAC GACAAAACCT TGTCACCGTC
GGAATCTTTT CGATTGTCGT GAACCTTCTG GTTCTTTCGA TTCCCATCTA TCTCTTCAAC
ATGTCGGATC GCGTGCTGAC CAGCCGAAGC GTCGACACGC TGATCATGCT GTCGTCGATC
GTGGTTATGG CGATCGCGGC TCATGTTCTG ATGGATATGC TGCGCCGCTT CATCCTGATG
AGGGTCGCCG TTGAAACCGA AGCGCGATTG GGCGGTCCCG TCCTGAGCGC CGCAGCGAAG
GCGGCGCAAA GCGGATCCAG CCGGGAGTTT CAGACCCTCG CGGACTTGCA GCACCTGCGT
GCGTTCATCA CGGGCCCGGT TCTGCTGACG ATCTTCGATG CACCGGTGGC CCCGGCCTAT
CTCGCCGTTG TCTTTCTGAT CAATCCTCAG CTGGGCTTGA TCGTGCTCGC TTCGAGCGCT
TCTTTGATCG GAGTCGCGCT CATCAACCAG CGTGTCACCG CGGTGCCGTT CACGCGGGCG
AATGCATTTG GAACCCGTGC GAATCTGCAG GCGGAAGCGA TGGCGCGCAA CGCCCAGGTG
ATCAATGCGA TGGGCATGAT TCCGGAAGGC GTCCAGATCT GGGGACAGGA AACGGTGGAA
TCGCTCAAGG CTCAGGTTGC CGGCCACGAC CTCAACATCA TCATGACCGG CATTTCAAAG
TTCCTGCGCC TCGGTACCCA GATCGGCATA CTCGGTTGGG GCGCTTATCT CGCGCTCGAA
AGCGAGCTGA CCGGTGGCAT GATCATCGCG GCGTCGATTG TCGCCAGCCG CGCCCTGGCT
CCGCTGGAAG GCACGATCGA GGGTTGGCGG CAGTTCGTCC AGGCTCGCTC GGCCTATAGC
CGCATCAAGA GTCTGCTTCA GAGTTCGCCG CTTAACCTCG AGCGGTTGCG GCTGCCGCGT
CCGGAGGGCC GCCTTAGCGT TGAGCGCATC CTCTACGTTC CCCCTCCGAA CAAGAAGGTG
ATCCTCAACG GCATCAGCTT TCAGCTCGAG CCAGGCGAGT CGCTCGCGAT CGTGGGGCCG
TCCGGAACGG GAAAGACCAT GCTGGCGCGA ATGCTGGTGG GATCGATTAT TCCGACCGCC
GGGAATGTTC GTCTGGATAT GATGGATCTG CGCAACTGGG ATCCGCGCCA GTTTGGCGAA
AGCGTCGGCT ACCTGCCCCA GGAGGTTCAA CTGTTTCCGG CGTCGATCAA GGCGAATATC
GCGCGAATGC GCGCGGACGC GGTCGATGAA GACATCTTCG ATGCGGCGGA AACGGCGGAT
GTTCACGAGA TGATTTCGGA GATGGCTCAG GGCTACGAGA CGGTGATCGG TATGGATGGC
AGCCCGCTGT CGGGCGGGCA GCGGCAGCGG ATCGGGCTCG CGCGCGCCTT CTACGGCAAT
CCCAGGTTGA TCGTGCTTGA TGAGCCAAAC GCCAATCTGG ATGCGAGCGG CGAGCGGGCG
CTGGCGAAGG CATTGGTGCG CGCGAAGGAG AAGCGGATGA CGGTGGTGAC CATCACGCAG
CGGCCGGCGC TGCTACAGAG CGTCGACAAG ATCATGATCT TGCGGAACGG CGCCGTGCAG
GCGTTCGGAG CGCGCGACGA AGTGATTCCG CTGATGTCAG GCCGCAAACG ACCCAGCCCT
TCCGCCGCGC CAATGCTCGA CGCATGA
|
|---|
| Protein sequence | MSLDDNRGNS NSSSGSEDRA EPVISPAERD SNDQSDLASP VKPSETLDGR AEEVSPPVAA
DGKGADAPLP TAGGDHRGGK GNLNGGGGRG PQLHKRSGDN EFRDVLGKGL AAARQNLVTV
GIFSIVVNLL VLSIPIYLFN MSDRVLTSRS VDTLIMLSSI VVMAIAAHVL MDMLRRFILM
RVAVETEARL GGPVLSAAAK AAQSGSSREF QTLADLQHLR AFITGPVLLT IFDAPVAPAY
LAVVFLINPQ LGLIVLASSA SLIGVALINQ RVTAVPFTRA NAFGTRANLQ AEAMARNAQV
INAMGMIPEG VQIWGQETVE SLKAQVAGHD LNIIMTGISK FLRLGTQIGI LGWGAYLALE
SELTGGMIIA ASIVASRALA PLEGTIEGWR QFVQARSAYS RIKSLLQSSP LNLERLRLPR
PEGRLSVERI LYVPPPNKKV ILNGISFQLE PGESLAIVGP SGTGKTMLAR MLVGSIIPTA
GNVRLDMMDL RNWDPRQFGE SVGYLPQEVQ LFPASIKANI ARMRADAVDE DIFDAAETAD
VHEMISEMAQ GYETVIGMDG SPLSGGQRQR IGLARAFYGN PRLIVLDEPN ANLDASGERA
LAKALVRAKE KRMTVVTITQ RPALLQSVDK IMILRNGAVQ AFGARDEVIP LMSGRKRPSP
SAAPMLDA
|
|---|
| |