| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_1228 |
|---|
| Symbol | |
|---|
| ID | 6314304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | + |
|---|
| Start bp | 1301823 |
|---|
| End bp | 1303136 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 642643606 |
|---|
| Product | portal protein SPP1 |
|---|
| Protein accession | YP_001917399 |
|---|
| Protein GI | 188585854 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01538] phage portal protein, SPP1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.000589045 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGACTACTT TACAAGATTA CATTGAAGAA AATTATAATG ATAGAGAAAC TTTCTTTAAA
GAAGAAGTTA ACAGAATGGA TAATGTGAAA AGGGTTAATG AGATAATTGA TATAAAGGAA
TTTCTTGAAG GTAAGAATCA TTCAATATTG AACAGTCAAA CAGAAGAATA TAAAGGCAAA
ACTTATTATC CTGCTACTAT AGTTTTGAAT TATGCTAAAA CAATCTGTAA TTTTCAGACT
AATTTTCTAT TAAAGAATCC AGTTAGTTTA ACTTGTAGTA ATGAGGGCTT GTTGAATAGG
GTGAAAGAGG TTTATGATAT TGGGAATTAT GACAGGATAG ATTTTGATAT ACTTGACAAA
GTTGTTAAAT ACGGAAACGC TTATGAATAC CCGTATATTT CAGAAGATGG ATACATTTAC
AGTAAAATCA TTCCCCCAGA AGATGGCTAT CCTATCTTTT CAGAGTTTGG TAATGAATAT
ATAGGATTTA TTGAAAGTTA TACAGTTGAT AATGTAACAT TCTGGGTTGT TTTTACAGAG
GATAAAGTAG AAGAGTATAG CAACAAAGGT GGTAAGATAC ACAAAATAGG GGAGTATGAA
AATGTTTCAG GATTGCCTTG TATCTACAAA AGTGATAATG AATTAGATGA AAACTTTGGC
AGATCAGATG TGTTACGGTT TGGTGAAATC ATTGAAGAAA TGGAAAGATT GATTTCAAGG
TCTTGCGATG GTTTATATAA ATACATGGAT GGGCTGCCTA TTATGTCAGG TCAGCAATTA
GAGGGAGAAG AAGGGGTTAA TCCTAAAATA GCAGGAGAAG GATTAAACCT TGAAGATGGA
GCAGAATTTT ACTTTGCCAA TAATGAAATA AACGAGAGAG CATTTAAGGA AATTTATAAT
ACACTTAAAC AGGCGTTACT GGATATTTCC CAAACTCCTG CAGTTGCCTT TAACCAAACT
GATATTTCTA ACCTTTCAGA AGTTAGTATT AGAATGATGT ACACATTAGC TAGTATGAAA
GGTTCACTAA ATGAAAAGTT TATGAGAGAA GGGTTTGAAC AGAGGTTTGA TAGGTTTAAG
CGGTTGTTGG ATTATAAAGG AGAGAATTAT GAAGGGTGGG AGACATTAGA CGCTGTGTTT
CATCCTGCAC TTCCAAGAAA TGATAATGAA GTTATTGATA ACTTACAGAA GTTAGATGAT
ATGGGAGCAA TTAGTCTGGA TACGTTGTTA GACAAGAATC CATACGTTAA CGATAAAAAC
TTTGAAAAGA AAAGATTAGA AGAAAGCAAT GATAATGGGA ATAGTGAAGA ATAG
|
|---|
| Protein sequence | MTTLQDYIEE NYNDRETFFK EEVNRMDNVK RVNEIIDIKE FLEGKNHSIL NSQTEEYKGK
TYYPATIVLN YAKTICNFQT NFLLKNPVSL TCSNEGLLNR VKEVYDIGNY DRIDFDILDK
VVKYGNAYEY PYISEDGYIY SKIIPPEDGY PIFSEFGNEY IGFIESYTVD NVTFWVVFTE
DKVEEYSNKG GKIHKIGEYE NVSGLPCIYK SDNELDENFG RSDVLRFGEI IEEMERLISR
SCDGLYKYMD GLPIMSGQQL EGEEGVNPKI AGEGLNLEDG AEFYFANNEI NERAFKEIYN
TLKQALLDIS QTPAVAFNQT DISNLSEVSI RMMYTLASMK GSLNEKFMRE GFEQRFDRFK
RLLDYKGENY EGWETLDAVF HPALPRNDNE VIDNLQKLDD MGAISLDTLL DKNPYVNDKN
FEKKRLEESN DNGNSEE
|
|---|
| |