| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4096 |
|---|
| Symbol | |
|---|
| ID | 4596610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 4327298 |
|---|
| End bp | 4328824 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639778702 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_925280 |
|---|
| Protein GI | 119718315 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0377217 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATCT CACCCGGTGG GGCACAGCTC AACATCGCCA ACGGGGTGCG AGAGTTCGCC
CGCGGAACAC CGCGTCAGCC CGCCGTCATC GACGGCGAGC GCATGCTCAC CTACGCCCAG
CTGGGAGACC GTGCGGCCCG CTTGGCCAAC GCGCTCGTCG CGCGCGGCGT GCGCCCCGGC
GAGCACGTCG CGGTCTGCGT CGGCAACCGC CTCGAGCATC CCGAGATCGC CTGTGGGATC
GCCATGGCGG GGCTGGTGAT CGTGCCGCTG AACCCGCGGT ACACCGAGCC CGAAGCCCGC
TACATCATCG AACACTCCGG CGCGCGTGCG GTGATCACCG AGGCACACCT GGCCAGCGTG
GTCACCCCTG CCGCTGCCGA CCAGGGGGCG TTCGTCGTGG TCCTCGGCAC GAGTCCGGAC
TTCGAGTCCT ACGACGAGGT CCTGGCGGCG TCCTCGCCCG AGGACCCCGA GTACCCGGTG
GACGAGACAG AGCCGTTCTG CATCGCGTAC ACCTCCGGGA CCACCGGCCG CCCCAAGGGG
GTGATGATCA GTCACCGCTC CCGCGCGCTG ACGTTCTACC AGGCCGCCAC CGAGTGGGGC
CTGGGCACCG GGCGGACCTC GCTGGCCGTA GCGCCGATGT ACCACGGCGC CGGGTTCGCC
TTCGGCTACG CCCCGGTGTT CACCGGAGGC ACCGTCGTGA TGCTGCCCAA ATGGTCGCCC
GAGCAGATGC TCGAGCTCGC CGAGCGCCAC CGCGTGCAGT CGATCTTCCT CGTGCCCGCC
CACGCCCAGA TGCTCCGGCG CCTGGGAGGC GAGGCGATCG CGACACGAGA CCTCTCCAGT
CTCGACACGC TGTACTTCAA CGCCGCCGCC CTGCCCTTCG AGCTGAAGAA GTGGGTGATC
GAGTCCTTCC CGGGTGCCGG CGTCCACGAG CTCTACGGCT CGACCGAGAG CGGCATCATC
ACCAACCTGC GCCCGGTGGA CATGCTGCGC AAGCCCGGGT CCGTCGGCCA GCCATGGTTC
ATGACCGAGA TCCGGGTGGT CGACCTGGAC GGCGCGCCCG TCGGACCCGG CGGCATGGGC
GAGCTCTACA GCCGGTCGCC GTACCTCATG CTCGGCTACT ACAACGACCC CGACGCGACG
GCGAGGTGCA CGAGCGAGGA CGGCTTCGTC ACCTGTGGGG ACCTGGTCCG CCTGGACGAC
GAGGGGTATG TCCACATCGT CGGCCGCAGC AGCGACATGA TCGTGTCGGG CGGGATCAAC
ATCTACCCGC GCGAGGTCGA GGACGTGCTC GCGCGCCACC CGAGCGTCAC CGACGTGGCC
GTGGTCGGAC GGTCGTCCGA AGAATGGGGC GAGGAGGTCA CCGCGTACGT CGTGCTCGCG
TCCGGGGTCA CGCTCGACGT CGAGAGCCTG GAGGCGCACT GCCGGGAGTC GCTGGCCGGC
TACAAGATCC CCCGCAGGTG GCACGTCATC GGCGAGCTGC CGCGCAACGC CGCCGGCAAG
GTCGTCAAAC GCGATATCCC GGACTGA
|
|---|
| Protein sequence | MPISPGGAQL NIANGVREFA RGTPRQPAVI DGERMLTYAQ LGDRAARLAN ALVARGVRPG
EHVAVCVGNR LEHPEIACGI AMAGLVIVPL NPRYTEPEAR YIIEHSGARA VITEAHLASV
VTPAAADQGA FVVVLGTSPD FESYDEVLAA SSPEDPEYPV DETEPFCIAY TSGTTGRPKG
VMISHRSRAL TFYQAATEWG LGTGRTSLAV APMYHGAGFA FGYAPVFTGG TVVMLPKWSP
EQMLELAERH RVQSIFLVPA HAQMLRRLGG EAIATRDLSS LDTLYFNAAA LPFELKKWVI
ESFPGAGVHE LYGSTESGII TNLRPVDMLR KPGSVGQPWF MTEIRVVDLD GAPVGPGGMG
ELYSRSPYLM LGYYNDPDAT ARCTSEDGFV TCGDLVRLDD EGYVHIVGRS SDMIVSGGIN
IYPREVEDVL ARHPSVTDVA VVGRSSEEWG EEVTAYVVLA SGVTLDVESL EAHCRESLAG
YKIPRRWHVI GELPRNAAGK VVKRDIPD
|
|---|
| |