| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3215 |
|---|
| Symbol | |
|---|
| ID | 4599153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 3413196 |
|---|
| End bp | 3414044 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639777821 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_924404 |
|---|
| Protein GI | 119717439 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.34501 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACCGTCC TCGACCGTCG CCCGGGCCTC CGGGTGGGCC TGCTCCTGAC GCCACCGATG
CTGTGGCTGG GAGTGGCCTA CCTGGGGGCC CTGGCGGCTC TCCTCATCGC CTCGCTGTGG
ACCCAGAACG ACTTCACCGG CCACATCGAG CGCTCGTGGA CCCTGGAGAA CTTCAAGACC
CTCTTCACGG TCGACGTCTA CCGGACGATC ACCTTGCGCA CGATCGGCAT CGCGGCGCTG
GTGACCGTCG TCGACGCGCT GCTGGCGTTC CCGATCGCGC TGTACATGGC CAAGGTCGCC
TCACCACGGA TGCAGCGGAT CCTGGTGATC TCGGTGCTGA CGCCGCTGTG GGCGTCGTAC
CTGGTGAAGG CCTACGCGTG GCGCGGCATG CTCTCCGCGG ACGGCCCGAT CGCCTGGATC
GCCGCGCCGT TCGGGCTGCA CACGCCGGGC TACGGCCTGC CCGGCGTGAT CATCACGCTC
GCCTACCTGT GGCTGCCCTA CATGATCCTG CCGGTGTACG CCGGGCTCGA GCGGCTGCCC
GACTCGCTCT TCGAGGCGTC CGCGGACCTG GGCGCCGGCG CCTGGACGAC CCTGCGCCGG
GTGGTGGTCC CGATGGCCTT CCCGGCGATC GTCGCGGGCT CGATCTTCAC GTTCTCGCTG
TCGATGGGCG ACTACATCGC GGTCAAGATC GTGGGCGGCA CCAGCCAACT GCTCGGCAAC
GTCGTCTACG ACAACCAGGG CGCGGCCAAC AACCTGCCGT TCGCCGCAGC GGTGGCGACG
GTGCCGATCG TCGTGATGCT CGCCTACCTC GCCGCCGTCC GCCGTACCGG CGCGCTGGAG
AACCTGTGA
|
|---|
| Protein sequence | MTVLDRRPGL RVGLLLTPPM LWLGVAYLGA LAALLIASLW TQNDFTGHIE RSWTLENFKT
LFTVDVYRTI TLRTIGIAAL VTVVDALLAF PIALYMAKVA SPRMQRILVI SVLTPLWASY
LVKAYAWRGM LSADGPIAWI AAPFGLHTPG YGLPGVIITL AYLWLPYMIL PVYAGLERLP
DSLFEASADL GAGAWTTLRR VVVPMAFPAI VAGSIFTFSL SMGDYIAVKI VGGTSQLLGN
VVYDNQGAAN NLPFAAAVAT VPIVVMLAYL AAVRRTGALE NL
|
|---|
| |