| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_2780 |
|---|
| Symbol | |
|---|
| ID | 4596256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 2949443 |
|---|
| End bp | 2951137 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639777385 |
|---|
| Product | 3-ketosteroid-delta-1-dehydrogenase |
|---|
| Protein accession | YP_923969 |
|---|
| Protein GI | 119717004 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.386374 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCCC CCCTGCCGGC CGGTCTCCCG GCGCGCGTCG ACGTCGTCGT GGTCGGCGCC
GGCGGTGCCG GGATGACCGC CGCGCTCGCC GCGGCCGCAC GCGGCCTCGA CACGGTCCTG
ATCGAGAAGA GCGGGTACTT CGGCGGGTCG ACGGCCCGCA GCGGTGGCGG GGTCTGGATC
CCCAACAACT ACGCGCTGAA GGCGGCCGGC CAGGGCGACG ACCCCGAGCT CTCCCGGCTC
TACCTGGACT CGATCGTCGG TGACGTGGTG CCGAAGGTCC GCCGCGACAC CTACCTCGAG
CGCGGGCCCG AGGTCATGGA CTTCATCCGG GAGCGGACGC CGCTGCGGTT CACCTGGGTG
CCGCAGTACG CGGACTACCA CCCGGAGGCG CCCGGGGGCC GGGCGGCGGG TCGGTCCGCG
GAGCCGGTGC CGATGGACGC CCGGTTCCTC GGCGACGAGC TCGAGCGGTT GCACCCGCAG
TACACCAAGG CGCCGGTCAA CATGATCGTC ACCCAGGCCG ACTTCCGGAA GATCAGCCTC
GGTCTGCGCA CCCTGCGCGG CCCGCTGACC ATGGTCAAGG TGCTGCTGCG CCGGGTCGTC
AGCCTGGTGC GCGGCCAGCG GATGTACGCG ATGGGCAACG CGATCGCGAT CGGGCTGCGC
AAGGGCCTGA TGGACGCCGG CGTGCCCGTC CACTACGACA CCGAGCTGCG CGACCTGGTG
CTCGAGGACG GCCGGGTCGT CGGCGTACGC GTGCTCCGCG ACGGCGCCGA GACCGTCGTC
CGCGCCCGGC GCGGCGTGAT CCTCGGCAGC GGCGGGTTCG AGAAGAACCT GGAGCTGCGC
GAGAAGTACC AGCCGCAGCC GACGTCCGTC GAGTGGACGA CCGGCTCGCA GTTCAACACC
GGCGGCGGCG TGCTCGCCGG CATCGCCGCC GGCGCGCAGG TCGACCTGAT GGACGACGCG
TGGTGGGGTC CCACGATCCC GCTGCCGTCG GGCCCGTGGT TCTGCCTGGC CGAGCGCAAC
CTGCCGGGCT CGATCATCGT CAACCAGGCG GGCCGGCGGT TCATGAACGA GGCGCTGCCG
TACGTCGAGG CCGTGCACGA GATCTACCGG GGCGAGGCCA CCGGGGTCGG TCACGTCCCG
GCGTGGATGG TCCTCGACCA GCGCTACCGC AACCGCTACC TGTTCGCCGG GCTCTCGCCG
CGCCAGCCGT TCCCGGGCCG GTGGTACCAG AACGGCACGG TGCGCAAGGC AGCGACGCTG
GCCGACCTGG CGGCGGAGAT CGGCGTACCG GCCGACGCGC TCGTCGAGAC CGTGGCGCGC
TTCAACGGCT TCGCCGGGAC CGGCATCGAC GAGGACTTCC ACCGCGGCGA GAGCGCCTAC
GACATGTACT ACTCCGACCC GCGGGTCAAG CCGAACCCGT CGCTGCACGC GATCGACCAG
GCGCCGTACT ACGCGGTGAA GATCGTGCCC GGCGACCTCG GCACCAAGGG CGGTCTGGTC
ACCGACGAGC ACGCGCGGGT GCTGCGGCCG GACGGGTCGC CGATCCCGGC CCTGTACGCC
GCCGGCAACG TCTCGTCCGC CGTCATGGGG CGCACCTACG CCGGCCCGGG TGCGACGATC
GGACCCGCCC TCACCTTCGG CTACCTCGCG GCCGAGGACA TCGCCGCCCA GGAGAACCCC
GAGGAGCACG CCTGA
|
|---|
| Protein sequence | MTPPLPAGLP ARVDVVVVGA GGAGMTAALA AAARGLDTVL IEKSGYFGGS TARSGGGVWI
PNNYALKAAG QGDDPELSRL YLDSIVGDVV PKVRRDTYLE RGPEVMDFIR ERTPLRFTWV
PQYADYHPEA PGGRAAGRSA EPVPMDARFL GDELERLHPQ YTKAPVNMIV TQADFRKISL
GLRTLRGPLT MVKVLLRRVV SLVRGQRMYA MGNAIAIGLR KGLMDAGVPV HYDTELRDLV
LEDGRVVGVR VLRDGAETVV RARRGVILGS GGFEKNLELR EKYQPQPTSV EWTTGSQFNT
GGGVLAGIAA GAQVDLMDDA WWGPTIPLPS GPWFCLAERN LPGSIIVNQA GRRFMNEALP
YVEAVHEIYR GEATGVGHVP AWMVLDQRYR NRYLFAGLSP RQPFPGRWYQ NGTVRKAATL
ADLAAEIGVP ADALVETVAR FNGFAGTGID EDFHRGESAY DMYYSDPRVK PNPSLHAIDQ
APYYAVKIVP GDLGTKGGLV TDEHARVLRP DGSPIPALYA AGNVSSAVMG RTYAGPGATI
GPALTFGYLA AEDIAAQENP EEHA
|
|---|
| |