| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1107 |
|---|
| Symbol | |
|---|
| ID | 4599360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 1169096 |
|---|
| End bp | 1172137 |
|---|
| Gene Length | 3042 bp |
|---|
| Protein Length | 1013 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639775703 |
|---|
| Product | HsdR family type I site-specific deoxyribonuclease |
|---|
| Protein accession | YP_922310 |
|---|
| Protein GI | 119715345 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACCTCG ACGAGCTCGG CGTTCCCGGC AGCGCACCGC ACTTTGAGCC GATCTCGGTC
AGTGACGAGA GCACGGTCGT TGCTGAGTTC GTCCCTGACC CGAGCAAGGA ATCGACGTAT
CAGTCGGAGG CTGAGCTCGA AGCCGCGTTC ATCCGGCTGC TTCAGGAACA GGCTTACGAG
TACCTGCACC TCACCTCGGC CGCCGCGTTG GAGGCCAACC TGCGCGTGCA ACTGGAAGCC
GTCAACGGCA TCACGTTCTC CGAGGCTGAG TGGCAGCGCT TCTTCACCGA AACGATCGCC
GGCCCGAACA AGGGGATCGT GGAGAAGACT GCGCTGGTTC AGGAGGACCA CGTCCAAATC
CTGCGGCGCG ACGACGGGAC GACGAAGAAC GTATATCTGA TCGACAAGCG GAACATCCAC
AACAACCGGC TCCAGGTGAT CAACCAGTAC GAAGCAGCCG GAGCCCACGC CACGCGTTAC
GACGTGACGA TCCTGGTCAA CGGCCTACCG ATGGTGCACG TAGAACTGAA GCGCCGGGGC
GTCGACATCC GTGAAGCCTT CAACCAGATC AACCGCTACG CCCGCGACAG CTTCTGGGCC
GGCTCGGGGC TGTTCGAGTA CGTGCAGCTG TTCGTGATCA GCAACGGCAC GCTGACGAAG
TACTACTCCA ACACGGTCCG CGACTCCCAT CTCGCCGACC AGAGGCAAGG CAAGCGGTCA
CGTCGGAAGA CGTCGAACAG CTTCGAGTTC ACCAGCTGGT GGGCGGATGC CAACAACCGG
CCGATCGCCG ACGTAGTTGG CTTCACCAAG ACGTTCTTTT CCAAGCACAC GGTGCTCAAT
ATCCTCACGA AGTACTGCGT CTTCGACGTC GACCGCAAAC TCCTGGTGAT GCGCCCGTAC
CAGATCGTCG CCGCTGAGCG GATCCTGCAG CGTATCGAGA CGTCGACGAC GTACAAACAG
TTCGGCTCGT TGGCTGCCGG GGGTTACATC TGGCACACGA CCGGGTCAGG CAAGACGCTG
ACCAGCTTCA AGGCCGCCCA GCTCGCGAGT CGTCTCCCGT TCGTGGAGAA GGTGCTCTTC
GTCGTCGACC GCAAGGACCT CGACTACCAG ACCATGCGGG AGTACGAACG CTTCGAGAAG
GGCGCGGCCA ACTCCAACAC CTCCACCAGC GTCCTGGCCA AGCAGTTGGA GGGCCCGAAC
GCGCGGATCA TCATCACCAC GATCCAGAAG CTCGCCAGGT TCGTCAGCTA CAACCGGCAG
CACTCGATCT ACTCCTCGCA CGTCGTGGTG ATCTTCGACG AGTGTCACCG CAGCCAGTTC
GGCGACATGC ACTTGGCGAT CACCAACGTC TTCCGCCGCT ACCACCTGTT CGGCTTCACC
GGCACACCGA TCTTCGCCGA GAACGCCGGC ACCAGCGGCA GCCCGCGACT GCGCACAACC
GAGCAGGCCT TCGGGGAGAA GCTGCACACC TACACGATCG TCGACGCCAT CAACGACCGG
AACGTGCTGC CCTTCCGGGT CGACTACGTC AACACCCTCA AGCCCGCCGA GAAACTGACG
GACGCTCAGG TCGCGGCCAT CGACACCGAG CGAGCACTGC TGGCTCCGGA GCGGATCAAC
CAGATCGTGG GCTACATCCG CGAGCACTTC GACCAGAAGA CCAAGCGCAG CTCCGCGTAT
CGGCTCGGCG ATCGCCGGCT CGCAGGGTTC AACTCATTGT TCGCCGCCGC CTCGATCGAC
GCCGCGAAGC GCTACTACGC CGAATTCGCC CGGCAGCAGT CAGACCTGGC GTCAGAGCAG
CGGCTCAAGG TCGGCCTCAT CTTCAGCTTC ACCGCCAATG GGGAGGAGGC CGACGGCCTG
CTGGCCGAGG AGGAGTTCGA GACCGGCGAC CTCGACGCGA CCTCACGTGA CTTTCTGGAA
GGCGCGATCC GCGACTACAA CGCGCTGTTC GGCACCAGCT TCGACACCTC GGCCGACAAG
TTCCAGAACT ACTACAAGGA CCTCTCCGAG CGGTTGAAGA GCCGCGAGCT GGACCTCGTC
ATCGTGGTCA ACATGTTCCT CACCGGCTTC GACGCCACCA CCCTGAACAC TTTGTGGCTG
GACAAGAACC TGCGCTCCCA TGGGCTGATC CAGGCGTACT CGCGCACGAA TCGCATCCTG
AACTCGGTCA AGACCTACGG CAACATCGTG TCGTTCCGCG ACCTGGAGGA CGCCACCAAT
GACGCACTGG CGCTGTTCGG CAACAGGGAC GCCCGCGGCA TCGTCCTGCT GCGGCCGTAC
GCCGACTACT ACGCGGAGTA CGAAAATGCC GTCGCCGAGC TCACCGAAGT CTTCCCGCTC
GGGGAGCAGA TCATCGGCGA GGCGGCGCAG AAGCAGTACA TCGCCCTGTT CGGAGTGATT
CTACGACTGC GAAACATCCT CACCTCGTTC GACGAGTTCG CCGGACACGA GCTGCTGACC
GAGCGCGACT ACCAGGACTA TCAGTCGATC TACCTCAACC TGTACGCCGA GTTCCGCGGC
GCCAAGGAAG CGGAGAAGGA GTCGATCAAC GACGACGTCG TCTTCGAGAT CGAGTTGATC
AAGCAGGTCG AGGTCAACGT CGACTACGTG CTGATGCTCG TCGAGAAGTG GCGCGACGCC
AGGGGCAACG GTGCCGACCG AGAGATGGAC GCGCTGATGA AGATCCAGCG TGCGATCGAC
TCCAGCGTCA CTCTGCGCAA CAAGCGCGAC CTGATCATGG ACTTTGTAGA GACAATGACT
GTGACCGGCG ACGTCAACGA CGACTGGCGG CGCTTCGTCG CCGCGAAGCG GGCTGAGGAG
CTGACGAGCA TCATCACTGA AGAGAACCTC AAGCCCGACG AGACTCACGC CTTCGTTGAG
GCGGCCTTCC GGGACGGCGC CATCCCGACC ATGGGCACCG CGATCACCCG TATCCTCCCG
CCCATCTCGC GGTTCTCTCC GAGCGGCGGC CATACCGTCA AGAAGCAGGC CGTGATCGAC
CGGCTGCTCG CCTTCTTCGA CCGCTACTTC GGGTTGGCCT GA
|
|---|
| Protein sequence | MNLDELGVPG SAPHFEPISV SDESTVVAEF VPDPSKESTY QSEAELEAAF IRLLQEQAYE
YLHLTSAAAL EANLRVQLEA VNGITFSEAE WQRFFTETIA GPNKGIVEKT ALVQEDHVQI
LRRDDGTTKN VYLIDKRNIH NNRLQVINQY EAAGAHATRY DVTILVNGLP MVHVELKRRG
VDIREAFNQI NRYARDSFWA GSGLFEYVQL FVISNGTLTK YYSNTVRDSH LADQRQGKRS
RRKTSNSFEF TSWWADANNR PIADVVGFTK TFFSKHTVLN ILTKYCVFDV DRKLLVMRPY
QIVAAERILQ RIETSTTYKQ FGSLAAGGYI WHTTGSGKTL TSFKAAQLAS RLPFVEKVLF
VVDRKDLDYQ TMREYERFEK GAANSNTSTS VLAKQLEGPN ARIIITTIQK LARFVSYNRQ
HSIYSSHVVV IFDECHRSQF GDMHLAITNV FRRYHLFGFT GTPIFAENAG TSGSPRLRTT
EQAFGEKLHT YTIVDAINDR NVLPFRVDYV NTLKPAEKLT DAQVAAIDTE RALLAPERIN
QIVGYIREHF DQKTKRSSAY RLGDRRLAGF NSLFAAASID AAKRYYAEFA RQQSDLASEQ
RLKVGLIFSF TANGEEADGL LAEEEFETGD LDATSRDFLE GAIRDYNALF GTSFDTSADK
FQNYYKDLSE RLKSRELDLV IVVNMFLTGF DATTLNTLWL DKNLRSHGLI QAYSRTNRIL
NSVKTYGNIV SFRDLEDATN DALALFGNRD ARGIVLLRPY ADYYAEYENA VAELTEVFPL
GEQIIGEAAQ KQYIALFGVI LRLRNILTSF DEFAGHELLT ERDYQDYQSI YLNLYAEFRG
AKEAEKESIN DDVVFEIELI KQVEVNVDYV LMLVEKWRDA RGNGADREMD ALMKIQRAID
SSVTLRNKRD LIMDFVETMT VTGDVNDDWR RFVAAKRAEE LTSIITEENL KPDETHAFVE
AAFRDGAIPT MGTAITRILP PISRFSPSGG HTVKKQAVID RLLAFFDRYF GLA
|
|---|
| |