Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_0334 |
Symbol | |
ID | 4597971 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | + |
Start bp | 357823 |
End bp | 358725 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 77% |
IMG OID | 639774949 |
Product | FliA/WhiG family RNA polymerase sigma factor |
Protein accession | YP_921565 |
Protein GI | 119714600 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.734955 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGATC CGGAGGTCAA CGAGCCCGAC ACGCCCACCG CGGCCACCAG CGGGCCCGGC CCGCGACCCG GATCCGCCGA GGCGGACCGG CTGGCCGTGG AGCACGTACC GCTGGTGACG CACGTGGTGT ACGAGACACT CGCGCGAGTG CCGTCGTACG TCGACCGCAA CGACCTGCGC TCGGCCGGCC TCCTGGCCCT GGTGGCCGCC GCGCGGTCCT TCGACCCCGA GCGCGGGGTC CCGTTCGCCC GTTATGCCAT GCCGCGGATC CGGGGCGCGA TGGTCGACGA GCTGCGCTCG GTGGACTGGG CCTCGCGCTC GGTGCGCCGC CGGGCCCGGG AGATCGAGGA GGCGCGGGCC CGCCTGGCCG CGACGCTCGG CGAGTTCCCC GACGACGAGG CGGTCGCGGC CGCGCTCGGG ATGACCCTCG ACGAGGTCAA CCGGGTCGAC TCGGAGGCTG CCCGGGGGAC CGTCCTGCCC CTCGACGCCG GCGCCCAGCA GGGGCTGGCC GAGATCCTGC CGGTCCGCGA GGCGGGCCCG GAGGAGCGGG CCGTGCACCT CGAGCGGGTG CGCTACCTCG CCGACGCCGT CGAGGAGCTC CCGGAGCGGA TGCGCCTCGT GGTGCGCGGC TACTTCCTCG AGGAGCGCCC GATGGCCGAG CTGGCCGCCG AGCTCGGCGT CACCGAGTCG CGGGTCTCGC AGGTCCGCGC CGAGGCGCTC GCGCTGCTGC GCGACGCACT GGGTGAGGCC TTCGACCCGC ACCTGCCCAA GCCCCACCCC AATCCTGCGG GCGTGGCCGC CCGGCGCCGG CTCGCCTACA CCAGCGCCGT CGCGGCGCGG TACGCCGCCC GTCGCACGAT GCCGGCCCGC CGCCCGCACC GCGGGCTCGA GTCCACCGCC TGA
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Protein sequence | MTDPEVNEPD TPTAATSGPG PRPGSAEADR LAVEHVPLVT HVVYETLARV PSYVDRNDLR SAGLLALVAA ARSFDPERGV PFARYAMPRI RGAMVDELRS VDWASRSVRR RAREIEEARA RLAATLGEFP DDEAVAAALG MTLDEVNRVD SEAARGTVLP LDAGAQQGLA EILPVREAGP EERAVHLERV RYLADAVEEL PERMRLVVRG YFLEERPMAE LAAELGVTES RVSQVRAEAL ALLRDALGEA FDPHLPKPHP NPAGVAARRR LAYTSAVAAR YAARRTMPAR RPHRGLESTA
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