| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1320 |
|---|
| Symbol | |
|---|
| ID | 3706257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 1468765 |
|---|
| End bp | 1470744 |
|---|
| Gene Length | 1980 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637737819 |
|---|
| Product | Terpene synthase/squalene cyclase |
|---|
| Protein accession | YP_343348 |
|---|
| Protein GI | 77164823 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1657] Squalene cyclase |
|---|
| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGCG CACTTCGACA AGCTCCGGAA TCGGCTGGCG CCATAGGTAT TGCCGCCGCT
TCACCAGCAA CTGAAACTTC AGGCCAAGAT ACCCACCCTA GAGAGATCAG TGGGGCCATC
ACCGCTGCCC GGGATGCTTT ACTCAAACTC CAGCAAGCGG ATGGTCATTG GTGCTTTATG
CTGGAAGCAG ATTGCACCAT CCCTGCTGAG TATATTCTCT GGACCCACTT CACGGGCGAG
CTGGAACCTG AAATCGAGCG TAAACTCGCC GCTCGCTTGC GTGCTAAGCA AGCCAGCCAT
GGGGGCTGGC CCCTGTACGA AGGGGGCGAT TTGGACATTA GCTGTTCAGT GAAAGTCTAC
TACGCCCTAA AATTGGTCGG GGATGATCCC AATGCGCCCC ACATGCGCCG GGCCCGCGAG
GCCATTCTCG CCCAGGGCGG CGGTGCCCGC GCTAACGTTT TCACCCGCCT TGCCTTGGCC
ATGTTTAGCC AGATTCCCTG GCGTGGAGTT CCTTTTATTC CCGTGGAAAT CATGCTTCTG
CCCCGTTGGT TTCCCTTCCA TTTGAGCAAA GTCTCCTATT GGTCGCGGAC AGTTATGGTT
CCTCTGGCTA TTCTTTACAG CCTTAAGGCG CAGGCCCAAA ATCCCCGGAA TGTGCATATC
CAAGAGTTAT TCACTGTTCC ACCAGAGCAG GAACGGCACT ATTTTCCGGT ACGCTCCCGC
CTCAACAAAA TTTTGCTTTC GGTGGAACGC ACGGCCCGTT TGTTGGAGCC ATTAATTCCC
TCGATGCTCA GGCGCCGCGC CCTCAAAAAA GCAGAAACCT GGTTTACCGA GCGCTTAAAT
GGGGAGGATG GTCTCGGAGG TATTTTTCCC GCCATGGTCA ATGCCCACGA ATCCTTGATT
TTGCTAGGTT ATAGCCCGGA TCATCCTTGG CGGGTTCAGG CTAAAAAGGC ACTTCAGAAT
CTGGTGATAG AAGAGAAGAA CTCCGCTTCC TGCCAACCCT GCCTATCCCC AATTTGGGAT
ACGGGTTTAG CCGCTCTGGC CCTCCAGGAA ACCGAGGGCG GACATACCAC AGCGCCAGTC
ATCCGCGCCC TCGATTGGCT CAAGGAGCGG CAAATCCTGG AACAGTCTGG AGATTGGCAA
GTACAACACC CTAACCTTAA AGGGGGAGGC TGGGCTTTTC AGTATAACAA TAGCTACTAT
CCTGATCTCG ACGATACGGC CCTCGTAGCT TGGAGCATGG ATCAAGCCGC AACCCCGGAG
CGCTACGGGG AAGCTATAGG GCGAGCCTGC GATTGGCTCT GCGGAATGCA ATCTCGCAAT
GGAGGATTTG CTGCTTTCGA ATCAGATAAT ACGCATTATT ATCTAAATGA AATCCCCTTT
GCCGATCATG GGGCGCTGCT CGATCCTCCC ACTGCGGATG TTACTGCTCG CTGCATCGTA
TTGCTAGGCC GTTTAAATAA ACCCCAATAT GCGGAAACTC TGCAGCGCGC CCTAGATTAT
CTGCGCCGGG AGCAAGAGCC TAATGGCTCC TGGTTTGGTC GTTGGGGCAC CAATTATATT
TATGGGACCT GGTCAGCCCT GACCGCCTTG GAACAGGCAA ACATCGACCC CCAAGAAGGA
TTTATTCGGA AGGCCGTTGA GTGGCTAAAA CAAGTTCAGC GTTTAGATGG GGGCTGGGGT
GAAGACAACT ATTCTTATTT CGATTCTTCT CTTGCTGGCC GCTATCAGGA AAGCACGCCT
GTTCATACCG CCTGGGCCCT GCTTGCCCTC ATGGCCGTAG GGGAAGCCAA TAGCGAGGCC
GTTAAAAAAG GCATTGCCTA TCTCCTGCAG ATCCAGCAAG AAGATGGGCT GTGGGACCAT
CCAGCCTTTA ATGCTCCCGG CTTTCCCCGC GTGTTTTACC TTAAATACCA TGGTTATGAT
AAGTTTTTCC CCCTATGGGC CCTCGCCCGC TATCGCAACC ATCTTAATCG GCAGTGTTGA
|
|---|
| Protein sequence | MTRALRQAPE SAGAIGIAAA SPATETSGQD THPREISGAI TAARDALLKL QQADGHWCFM
LEADCTIPAE YILWTHFTGE LEPEIERKLA ARLRAKQASH GGWPLYEGGD LDISCSVKVY
YALKLVGDDP NAPHMRRARE AILAQGGGAR ANVFTRLALA MFSQIPWRGV PFIPVEIMLL
PRWFPFHLSK VSYWSRTVMV PLAILYSLKA QAQNPRNVHI QELFTVPPEQ ERHYFPVRSR
LNKILLSVER TARLLEPLIP SMLRRRALKK AETWFTERLN GEDGLGGIFP AMVNAHESLI
LLGYSPDHPW RVQAKKALQN LVIEEKNSAS CQPCLSPIWD TGLAALALQE TEGGHTTAPV
IRALDWLKER QILEQSGDWQ VQHPNLKGGG WAFQYNNSYY PDLDDTALVA WSMDQAATPE
RYGEAIGRAC DWLCGMQSRN GGFAAFESDN THYYLNEIPF ADHGALLDPP TADVTARCIV
LLGRLNKPQY AETLQRALDY LRREQEPNGS WFGRWGTNYI YGTWSALTAL EQANIDPQEG
FIRKAVEWLK QVQRLDGGWG EDNYSYFDSS LAGRYQESTP VHTAWALLAL MAVGEANSEA
VKKGIAYLLQ IQQEDGLWDH PAFNAPGFPR VFYLKYHGYD KFFPLWALAR YRNHLNRQC
|
|---|
| |