| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1195 |
|---|
| Symbol | |
|---|
| ID | 3706693 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 1303342 |
|---|
| End bp | 1303932 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637737698 |
|---|
| Product | SmpA/OmlA |
|---|
| Protein accession | YP_343227 |
|---|
| Protein GI | 77164702 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2913] Small protein A (tmRNA-binding) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCCAT GCACTCCTTC AATGTTTAAG CTTCTCATTT TTATCGTTGG ATGTGCAAGT
ATTGCGCTGA CCGGATGTAG TATTGAGCGT TTGCCAGGTG TTTATAGAAT TGATGTCCAG
CAAGGTAACG TCATTACTCA AGAGATGCTG GAGAAGTTAA GCCCAGGGAT GAGCAAGCAG
CAAGTGAGCT TCGTTTTAGG TAGCCCTCTC CTAATTGATA GCTTCCATCC TGACCGCTGG
TATTATATTT ATAGCTTCAA GCCGGGTAAT GAGCGCCGGA AGCAGCGCAC TATTACTATG
TGGTTTGAGG AAGGTAAGCT TTCCTATGTA GGTGGAGATG TTGAAATAGG CATCCAGAGG
GGATTACAAC AGGAACGGAG AGAGGGTCCC GTGTCAATCT CCGTGCCGCC GCGCCAGGAG
GATGAGGGCT TGCTAGGCAG CTTGATGGAT ATGTTAGATT TTAGTGACTC TTCTTCTGAG
GATGAGGATA CGAAAGAAAA TCTGCGGGGG AGCAGTGAAG ATACTGCTTT GCCGCCTTCC
CTAGAGAGTG AAATCAACAA AAACCCTGTT TTCTTCCGTT CTTCCCCCTA A
|
|---|
| Protein sequence | MRPCTPSMFK LLIFIVGCAS IALTGCSIER LPGVYRIDVQ QGNVITQEML EKLSPGMSKQ
QVSFVLGSPL LIDSFHPDRW YYIYSFKPGN ERRKQRTITM WFEEGKLSYV GGDVEIGIQR
GLQQERREGP VSISVPPRQE DEGLLGSLMD MLDFSDSSSE DEDTKENLRG SSEDTALPPS
LESEINKNPV FFRSSP
|
|---|
| |