| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0448 |
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| Symbol | |
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| ID | 3706619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 482374 |
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| End bp | 484992 |
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| Gene Length | 2619 bp |
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| Protein Length | 872 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637736958 |
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| Product | Type I site-specific deoxyribonuclease HsdR |
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| Protein accession | YP_342502 |
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| Protein GI | 77163977 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0363122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCAAA AAGAAAGCGA TATCGAGGAA AAATTAATCC ACAAGCTCCA AGAGCTAAAA
TACACCTACC GCCCCGACAT CCGTGATAAG ACCGCACTGG AGCAAAACTT CCGCGAGAAA
TTTGAAGCGC TCAACCATGT CCGCCTAACG GATGCGGAGT TTGCCCGCCT GCGCGACGAA
ATCGTCAACG CCGACGTCTT CCAGGCCGCC AAAACCCTGC GCGAATACGC TCACTTTCAG
CGCGAGAACG GCACGTCACT GGACTACATG CTGGTTAACC TCAAGGACTG GTGCAAAAAC
GACTTTGAAG TGATCAACCA GTTGCGCATC AACACCGATA ACAGTCACCA TCGCTACGAC
GTGATCCTGC TGCTCAACGG CCTGCCCGTG GCGCAGATCG AGCTGAAAAC CATCGGCATC
AACCCGCGCC GCGCCATGGA GCAGATCGTC CAGTACAAAA ACGACCCCGG CAACGGCTAC
GCCAATACGC TGCTGTGCTT TATGCAATTG TTTATCGTCA GCAACCGCGG CAACACCTAC
TACTTTGCCA ACAACCACAG CCAGCATTTC GCCTTTAATG CCGATGAGCG TTTTTTGCCC
ATCTACCAAC TAGCCAGCGA AGACAACCGC AAAATTACCC ATCTGGATGA CTTTGCCGAG
CAGTTTCTCG CCAAATGCAC CCTGGGCCAG ATGATAAGCC GTTACATGGT ACTGGTGGCC
AGCGAGCAAA AGCTGATGAT CATGCGCCCG TATCAGATCT ATGCGGTCAA AGCCATAGTG
GATTGCATTC ACCAGAACCG GGGCAATGGC TACATCTGGC ACACCACCGG CAGCGGCAAA
ACCCTCACCT CCTTCAAGGC GTCCACCCTC CTCAAGGACA ACCCGGACAT TGAAAAATGC
CTGTTCGTGG TGGATCGCAA GGACCTCGAT CGCCAAACTC GCCAGGAATT CAACAAGTTT
CAGGAAGGCT GCGTGGAGGA AAACACCAAC ACCGAAACCC TGGTGCGCCG CCTGCTGTCC
GAGGACTACG CCGACAAGGT CATCGTCACC ACCATTCAAA AACTGGGCCT GGCGCTGGAT
GAAAACAGCA AGCGCAACCA GCAGCGCAAA GACAGGGGCA AGTCCACTTA TAAAGAGCGG
CTGAAACCGC TGGGGGACAA ACGCATGGTC TTTATTTTTG ACGAATGCCA CCGCTCCCAG
TTTGGCGACA ACCACAAGGC CATTAAAGCC TTTTTCCCCA AGGCGCAACT CTTTGGCTTT
ACCGGTACGC CCATTTTTGA AGACAACGCC AACCACAAAC AGATCGACGG CACCATCGGT
TCCTACCGAA CCACCCAGGA CATCTTCGAA AAGCAGCTAC ACGCCTACAC CATCACCCAT
GCCATCGATG ACCGCAACGT GCTGCGCTTT CATATCGACT ATTTCAAACC CGAAAGTGCA
AGGACGAAAG AATCGGCCCA TGCCGCCAAC AACGGCAAAA AGCAGCCCAA GGCAAAACCC
GGCGAGGCCA TCACCCAGCA GGCCGTGGTG GAGTCAATTC TCGACAAACA CAACGCCGCC
ACCCACCAGC GGCGTTTTAA TGCCCTGTTG GCCACCTCCT CCATCAACCA GGCCATTGCC
TATTACAAAC TGTTCAAAGC GGAACAGGCC GCGCCACAAG AACAAGACCC CGCGTTCCAG
CCGCTGAATA TCGCCTGCGT GTTTTCACCC CCCGCCGACG GCAACAAAGA CGTGAAGCAA
CTGCAAGAAG ACTTGCCCCA GGAAAAGGCC GACAACCAGC AAGAGCCGGA GAAAAAGAAA
GCCGCCCTCA AAACCATCAT GGCCGACTAC AACGCCCAGT ACGGCGGTAA CCACAGCATC
AGCGAGTTCG ATCTCTACTA CCAAGACGTG CAGCAGCGCA TCAAGGATCA GCAGTACCCC
AACAGCGACT ACCCCCACCA AAATAAGATC GACATCACCA TCGTGGTGGA CATGCTGCTC
ACCGGTTTCG ACTCCAAATA CCTCAACACC CTCTATGTGG ACAAAAACCT CAAGCACCAC
GGTCTGATTC AGGCATTTTC ACGCACCAAC CGCGTGCTTA ACGACACCAA GCCCTACGGC
AACATCCTCG ACTTTCGGAG CCAGGAAAAA GCGGTGGATG AGGCCATCGC CCTGTTCTCC
GGCGAGGAAA CCAGCCGCTC CCGGGAGATC TGGCTGGTGG ACCCTGCCCC CAAGATGATT
GAGAAATACG AGCAAGCCGT GGCGGGGATA AAACAGTTCA TGGCCCAGCA AGGCGTCCCT
AACCACGTAG CGAATGAAGA GGAAAACAAC AAGGTGCTAG AGCCAAAAGC CGTCTACAAC
CTCAAGGGCG ACGCCGCCCG CGCCGAGTTC GTCAACCGCT TTAAGGAAGT CCAACGCCTG
AAGACCCAGC TCGATCAATA CACCGATCTC GACGAAGCCC AAGCGGAGAA AATCAATCGT
CTTTTGCCCG AGGAAGCGCT TCGAGCCTTG CGAGGGTCCT ATCTGGAAAC CGCCCAGCGC
CTCAAAGACC AGCAGGGCAA AAGCGGCAGG AAGCCAGCGA TGCCCAGGAA GCCATCGAGC
AGCTCGATTT TGAGTTTGTG CTCTTTTCCT CGGCGCTGA
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| Protein sequence | MIQKESDIEE KLIHKLQELK YTYRPDIRDK TALEQNFREK FEALNHVRLT DAEFARLRDE
IVNADVFQAA KTLREYAHFQ RENGTSLDYM LVNLKDWCKN DFEVINQLRI NTDNSHHRYD
VILLLNGLPV AQIELKTIGI NPRRAMEQIV QYKNDPGNGY ANTLLCFMQL FIVSNRGNTY
YFANNHSQHF AFNADERFLP IYQLASEDNR KITHLDDFAE QFLAKCTLGQ MISRYMVLVA
SEQKLMIMRP YQIYAVKAIV DCIHQNRGNG YIWHTTGSGK TLTSFKASTL LKDNPDIEKC
LFVVDRKDLD RQTRQEFNKF QEGCVEENTN TETLVRRLLS EDYADKVIVT TIQKLGLALD
ENSKRNQQRK DRGKSTYKER LKPLGDKRMV FIFDECHRSQ FGDNHKAIKA FFPKAQLFGF
TGTPIFEDNA NHKQIDGTIG SYRTTQDIFE KQLHAYTITH AIDDRNVLRF HIDYFKPESA
RTKESAHAAN NGKKQPKAKP GEAITQQAVV ESILDKHNAA THQRRFNALL ATSSINQAIA
YYKLFKAEQA APQEQDPAFQ PLNIACVFSP PADGNKDVKQ LQEDLPQEKA DNQQEPEKKK
AALKTIMADY NAQYGGNHSI SEFDLYYQDV QQRIKDQQYP NSDYPHQNKI DITIVVDMLL
TGFDSKYLNT LYVDKNLKHH GLIQAFSRTN RVLNDTKPYG NILDFRSQEK AVDEAIALFS
GEETSRSREI WLVDPAPKMI EKYEQAVAGI KQFMAQQGVP NHVANEEENN KVLEPKAVYN
LKGDAARAEF VNRFKEVQRL KTQLDQYTDL DEAQAEKINR LLPEEALRAL RGSYLETAQR
LKDQQGKSGR KPAMPRKPSS SSILSLCSFP RR
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