| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0376 |
|---|
| Symbol | |
|---|
| ID | 3706547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 412858 |
|---|
| End bp | 414948 |
|---|
| Gene Length | 2091 bp |
|---|
| Protein Length | 696 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637736888 |
|---|
| Product | multisensor diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_342432 |
|---|
| Protein GI | 77163907 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAGTT CCAAAAACAT TGTGCGGTTG TTAATTGTGG ATGCCTCCTT TGAGGATGCG
GAAATGGTGA CCAATCTGTT GCGCAAGATG GGATTTGCGG CGCGAGCCTC TCGGGTGGAG
AAAGAAGAAG AATTTCGGGA GGCAATAGAA GGGCAAAGTT GGGATATTAT CGTTTGTGCA
GCTATGTTGC CGCAATTCAG TGTAGCACGG GCAGCTCAGA TTCTCCTTCA ATCGGAAAAG
GATATTTCGC TTATTATTGT AGTGGATGAG AAAACGGACT CCGATGATAT CGATGAAATG
TATGTTGCCG GTGTCCGAGA TGTGGTGCTT AAGAGCCGCC CTCTCCGCCT TCAATCTGTT
ATTAAGCGCG AACTTCAAGA TCTGGAAAAC CGCCGGGCGC GCCGCCACAG TGAGATGGTT
TTAGGGGAAA GCGAGCGTCA GGTCCGCGCC TTGCTAGAGA GCTCCCGGGA TGCGGTAGGC
TATGTGCATG AAGGCATGCA TATCTATGCG AACCGGGCTT ATCTGGAACT GTTTGGTTAT
CATGAACTTG ATGAAATCGA GGGGATGCCC CTGCTGGATA TGATAGCCCC CGAGGAGCAC
AACCGTTTTA AAGCTTTTCT TAAGGAGTAT GGTGCTAGCG AGGGGAAAAG TGCCCATTTT
ACCTTACGGG CGCACAAAGC AGATGGCCAT ACTTTTACCG CCGCTTGGGA ATTTACTCCC
GCGAGTATTG AAGGTGAGTT TTGCACCCAA ATTGTCATTC GGGATAAAAC TTATGATCTT
GCTGCGGAGG AAAGGATTAA ACAGGTTCAG CAACGAGATA TATTGACCGG CTTCTTTAGC
CGGCCCCATT ACCTGGAATT GATGGAAAAG TGGGTAATTG CGGCCAGGGC AGGAGATAGA
GAGAGTAGTT TGCTCTATAT CGCTATTGAT CAATTCAATC GCGTCAGGGC GCGGGTTGGA
ATTGGAGCCA GCGATTTAGT CGTTGTTGAT GTGGCTCGAA TTCTACAACA ATATTGTGAT
GAAAAAGTGA TTCTGGCTCG CTTTGGAGAT GAAGTTTTTA CTCTTTTACT TCCTCATGGA
AGTGATGAGC AAGAGGACGC TTTGGCTGAA CAATTGCGTC AAGCCGTGGA TCGGCATTTA
GTGGAGATGG ACGAACGTAG CATTAATGTT ACTTGCAGCA TCGGGATTTG CCGAATAGGA
GAGAGTGCGC CGGGGGGTCA GCAAATACTA GAGCGGGCCC ATAAAGCGTG CCTCAAAGCC
CAGGAGGCGG GTGGTAATCG GATTGAGCGT TATAGGCCAG TGATCGAGGA CCTCACCGAT
CAGGAAAAAA TAAAACAATG GGAGGTCCAA CTCCGGGAGG CTATGAATAA TAAGGATGGT
TTTTGCCTGT TCTATCAGCC TATAGTTAGC CTCCACGGGG AGACTGAAGA GATTTTTGAA
GTTTTGCTGC GCATGACCGA TGACGCAGGT GGCTATATTC TTCCAGAAAA GTTCTTAGAA
CCAGCCGCTC AGCTTAAATT AATGGGCGAG ATCGATCGTT GGGTGATTGC CAAGGCCATG
AGTGTTTTGC ACAGCCGGCA TCAAGTAGGC CAGCTTATCC GGTTTTTTGT CAAATTGTCT
GACCCTTCTA TCCATGACAA AAACCTCCTG CCTTGGCTTA AAAAGCATTT GCAGGAGAGT
GGGCTGGATG CCCGTTCGCT GATTTTCGAA ATTAGCGAGA GCTCTGCCCT CAATTATTTA
AAGCGAGTAC AACAGCTTGT TGAGGGACTT CGGGTGTTAG GGTGCCAGTT TGCCCTGGAG
CATGTTGGTA CGGGGCTAGA TACGTCCAAT TGTTTGAAAC ATATTAATGT GGATTATCTT
AAAATTGATG GCGCTTTCAT CGAAAACCTT CTCCAAGATG AGCAAAACCA GGAGGCCGTT
AAAATTATCA TTGAAATGGC TAAGGAAGCC GGTAAGCCTA CCATCGCTGA ATTCGTTTCC
GATGCCAATA CCTTAGCTCT GCTTTGGCAA TTTGGCCTGG ATTATGCCCA AGGCCGTTAT
ATTCAGGAAC CCAATCAATT TCTGAGCTAT GAGTTTTCTG GTGGTATTTA A
|
|---|
| Protein sequence | MLSSKNIVRL LIVDASFEDA EMVTNLLRKM GFAARASRVE KEEEFREAIE GQSWDIIVCA
AMLPQFSVAR AAQILLQSEK DISLIIVVDE KTDSDDIDEM YVAGVRDVVL KSRPLRLQSV
IKRELQDLEN RRARRHSEMV LGESERQVRA LLESSRDAVG YVHEGMHIYA NRAYLELFGY
HELDEIEGMP LLDMIAPEEH NRFKAFLKEY GASEGKSAHF TLRAHKADGH TFTAAWEFTP
ASIEGEFCTQ IVIRDKTYDL AAEERIKQVQ QRDILTGFFS RPHYLELMEK WVIAARAGDR
ESSLLYIAID QFNRVRARVG IGASDLVVVD VARILQQYCD EKVILARFGD EVFTLLLPHG
SDEQEDALAE QLRQAVDRHL VEMDERSINV TCSIGICRIG ESAPGGQQIL ERAHKACLKA
QEAGGNRIER YRPVIEDLTD QEKIKQWEVQ LREAMNNKDG FCLFYQPIVS LHGETEEIFE
VLLRMTDDAG GYILPEKFLE PAAQLKLMGE IDRWVIAKAM SVLHSRHQVG QLIRFFVKLS
DPSIHDKNLL PWLKKHLQES GLDARSLIFE ISESSALNYL KRVQQLVEGL RVLGCQFALE
HVGTGLDTSN CLKHINVDYL KIDGAFIENL LQDEQNQEAV KIIIEMAKEA GKPTIAEFVS
DANTLALLWQ FGLDYAQGRY IQEPNQFLSY EFSGGI
|
|---|
| |