Gene Noc_0356 details

Gene Information

• Locus tag: Noc_0356
• ID: 3706527
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosococcus oceani ATCC 19707
• Kingdom: Bacteria
• Replicon accession: NC_007484
• Strand: -
• Start bp: 388780
• End bp: 390669
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 637736868
• Product: LppC putative lipoprotein
• Protein accession: YP_342412
• Protein GI: 77163887
• COG category: [R] General function prediction only
• COG ID: [COG3107] Putative lipoprotein

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATCCTC TTATTCCTAT GGTGATCTTT TTTCGAAAAG CAGGTAATTA CCTGCCGTTA 
GCGGGCCTTG CCATTCTGCT TGGGCTAACC GCCTGTACTT CACCGTCTCC CAAGGTTTCC 
CCCCAGGCAC CATCATCAGA ACTTGTCCAG GCTAAGGCCC TGGCGGCCGA AGGACGCTAT 
CGTGCCGCCG CTACAGCGTA TACCCAGCTG GCGGCTGACG CGCAATCGCC GCAGCGTCAA 
GATTACCAAT TACATGCTGC TGCTGCTCTG CTCCAAGGCA ATTATCAGCA AGAAGCTAAA 
ATGCTCCTTG AGAGTATTGC ACCCGAAAGC TTAGAATCGC CATTGAAGCT CCGCTATCAT 
CTTCTGGCTG CCCAGCTTGC AATAGCAGAA GGAGAAATGA AAAGGGCCTT GCTCCTCTTA 
GAAGGCGTCG AAAGCTTAGG ACCAAGCCTA GAGCAACAAG CCGCCCTCCA TCGGCTCCGG 
GCGCAAGCCT ATGAGCTTGA AGATAACCCC CTTGCCGCAG CCCGCGAACG AGTTCAATTA 
GAACCCTTGC TATCTGACGC CCAGGCCCTG CAGGAAAATC AGCGCGCCCT TTGGGGCCTG 
CTCATGGGCC TCTCTCCCTA TACTTTTGGG TCTTTGCCTC AAGAACCTCT CTCCCCTGCT 
CTCCAGGGTT GGTTAGAACT CGCGCGACTT TTTCAGCGCT ACCAGTTGGA TTCTCCCGAT 
TTACAGCAAG CGATAGAAAA CTGGCAGGCC CGTTACCCTG GGCACTCCGC CTCCTTGCCC 
CTGCTTCAGG CCGAGATGGC CACCCTCCCC ACGACGGCCT ACCAACCCTC TATCGCTTTA 
TTACTCCCCA CGGAAGGCCA GTTTGCGGCT TCCGCCAAAG CCGTGCAAAA TGGCTTTTTT 
GCAGCCTACT ACAATGATAA TAATGGCTGG CCATCTAACA TTCGTTTCTA TGAGGTCAAA 
ATTGACTCTG AAACCGGTAA CAGCAATATC TATAGCATTT ATCAACAAGC ACAAACAGAG 
GGCGCCTATT TTGTGGCAGG ACCGCTAACT AAACAGTCAT TGGCACAGCT TGTCGCAACC 
GGTGATTTGT CATTACCCAC GCTGGCCCTT AACTATCTGG AGAAATCCCA TGAAGGCATT 
GAAAAACTTT ATCAATTCAC GCTTTCTCCG GAAGATGAGG CCCGGGAGGT CGCTGAGCGG 
GCCTGGCACG ATGGACACCG CAACGCCCTA GCCCTCATTC CCAATACCCA ATGGGGTCAA 
CGGGTGAAAG ACGCTTTTGC CGAGCGGTGG GAAAGGCTAG GTGGCACCCT GGTAAAGTCT 
CAAGCCTATG ATCCGGAGAA AGAGGATTAC TCCCCTCTAA TTCAACGTTT ACTCGATCTT 
GATGATAGCC AATCCCGTCA GCGAGCACTC CAGGAGTTAG CCTTTGAGCC AGAGCGGCGC 
CATGAGGCTG ATTTTATTTT TCTCGCCGCC TTTCCACGGC AAGCCCGCCT CTTAGTCCCC 
CAGCTCCGCT TCCACCGAGC AGAGAAACTG CCTGTCTATA GCTCTTCCCA TATCTACACG 
GGGTACCCCG ATCCGGAAAA TGATCAGGAT CTAAACGGCG TACTATTCTG CGATATTCCT 
TGGGTTCTCG ATAAAAACGC ACAAAATGAT CCCAGTTACC AAAGCCTGGC CGCTGCTTAT 
CCAAGAAATC TTGAACAACT GAAACGATTC TACGCTTTAG GCGTCGATGC TTACCGAATC 
ATTCCCCATT TAAAGGCCCT CCAGCAGAAT CAGGATATGA CCTTTGATGG AGCCACAGGG 
ACATTACAGA TGGATGCTGG ACGACATTTG CGCCGCACGC TGAATTGGGC TCAGTTTAAA 
AAAGGGCAGC CCCAGCCGGT GGCTAAATAA 

 

Protein sequence

MYPLIPMVIF FRKAGNYLPL AGLAILLGLT ACTSPSPKVS PQAPSSELVQ AKALAAEGRY 
RAAATAYTQL AADAQSPQRQ DYQLHAAAAL LQGNYQQEAK MLLESIAPES LESPLKLRYH 
LLAAQLAIAE GEMKRALLLL EGVESLGPSL EQQAALHRLR AQAYELEDNP LAAARERVQL 
EPLLSDAQAL QENQRALWGL LMGLSPYTFG SLPQEPLSPA LQGWLELARL FQRYQLDSPD 
LQQAIENWQA RYPGHSASLP LLQAEMATLP TTAYQPSIAL LLPTEGQFAA SAKAVQNGFF 
AAYYNDNNGW PSNIRFYEVK IDSETGNSNI YSIYQQAQTE GAYFVAGPLT KQSLAQLVAT 
GDLSLPTLAL NYLEKSHEGI EKLYQFTLSP EDEAREVAER AWHDGHRNAL ALIPNTQWGQ 
RVKDAFAERW ERLGGTLVKS QAYDPEKEDY SPLIQRLLDL DDSQSRQRAL QELAFEPERR 
HEADFIFLAA FPRQARLLVP QLRFHRAEKL PVYSSSHIYT GYPDPENDQD LNGVLFCDIP 
WVLDKNAQND PSYQSLAAAY PRNLEQLKRF YALGVDAYRI IPHLKALQQN QDMTFDGATG 
TLQMDAGRHL RRTLNWAQFK KGQPQPVAK