Gene Nmar_1428 details

Gene Information

• Locus tag: Nmar_1428
• ID: 5774253
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosopumilus maritimus SCM1
• Kingdom: Archaea
• Replicon accession: NC_010085
• Strand: +
• Start bp: 1301869
• End bp: 1302390
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 641317074
• Product: THUMP domain-containing protein
• Protein accession: YP_001582762
• Protein GI: 161528936
• COG category: [R] General function prediction only
• COG ID: [COG1818] Predicted RNA-binding protein, contains THUMP domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 48
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAATCTGA TAGTGACATG TGCCAGACAT CTAGAGCCAG AGACAGAAGA GGAATTGAGG 
GGATTTTTAG ATGAATTTGG AGATTCTGAT CCCAAGGTTA CAATCACAAG CATGTCAGGA 
ATTCTTACTG CTGAAACGAA ACTAGATCCA GTAGAGGTGG TACGAAAGAT AAAAGAGACA 
CTCCTTGATG AGCCATGGAG TGTCAGATAC TGTTTGAGAA TCATTCCAAT TCAGAGAGTT 
GTGGAGACAA AGATAGAAGA GATTGAGAAA GTTGTCGAAG AGTTTTCTGA TGGAATATCA 
AAAGATGAAA AATACAGAAT ATCTATTGAG AAAAGAAACT CAGACATGTC CAGTCAGGAT 
ATAATTACAA AAATTGCAAG CAAGATAAAA AGTCAGGTCT CACTGGAATT TCCAGACAAG 
GTTGTTTTAA TTGAGATTTT AGGCAACAAG ACTGGAATTT CTGTGCTAAA AAAATCAGAC 
ATTTTGAGTA CAGAGAAAAC TAAACGCAGT ATGTCAGAGT AA 

 

Protein sequence

MNLIVTCARH LEPETEEELR GFLDEFGDSD PKVTITSMSG ILTAETKLDP VEVVRKIKET 
LLDEPWSVRY CLRIIPIQRV VETKIEEIEK VVEEFSDGIS KDEKYRISIE KRNSDMSSQD 
IITKIASKIK SQVSLEFPDK VVLIEILGNK TGISVLKKSD ILSTEKTKRS MSE