| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmar_0243 |
|---|
| Symbol | |
|---|
| ID | 5773388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosopumilus maritimus SCM1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010085 |
|---|
| Strand | + |
|---|
| Start bp | 214559 |
|---|
| End bp | 216688 |
|---|
| Gene Length | 2130 bp |
|---|
| Protein Length | 709 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 641315865 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001581577 |
|---|
| Protein GI | 161527751 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1204] Superfamily II helicase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAG AAAAACTAGA ACTTCCAGAA TCTGCAATTG AATTTTTAAA ATCACAAGGA
TTTGAAAAAT TATATCCACC ACAAGCTGAT AGCGTAAAAT CTGGATTACT TGACGGAAAA
AATATACTGG TATCTGCTCC AACTGCAAGT GGAAAAACTT TGATTGCAAT GCTTGCAATG
ATGAGTTACA TTTCAAAAAA TAAAGGCAAA GTGATCTATC TCAGTCCTTT GAGAGCTTTG
GCTGCTGAAA AATTCTCAGA ATTTAAAAAA TTAGAAAAAG TTGGATTGGG AAATAAAACC
AAAGTTGGAA TATCTACTGG TGATTTTGAA AATATTGAAA AAAATCTAGA AAAAAATAGC
ATTTTGATTT TGACTAATGA AAAAATGGAT TCTATAATAC GACATGGCGC TGAATGGATT
GATGAAATTG GTTTAGTAAT TGCAGATGAA GTTCATCTAA TTGGTGATGA AAGTAGAGGT
CCAACATTGG AGATGATCTT AACTCAACTC AAGCTCTTGG AAACAAAACC TCAAATCGTT
GGTCTTAGTG CAACCATTAC AAATTCTGAT GAAATTGCAG ATTGGCTTGA ATGTGTTTTA
GTAGAAAATT CTTGGAGACC TGTACCACTT TCAGAAGGAG TATGTGATGC AGGTGAAGTA
ACTATGGCTG ATGGCACTGT ATTTGAAGTT GAGCGTAGTA TACGTGGAAC TCCTATTGAT
TTAGGCGTGC AATCGGTCAA AGATGGCGGA CAATCACTAG TTTTTGCTGA AACCAGAACC
CGCTCAAAAT CTCTTGCAAC AAAAGCTGCA GATGCAATAT CTCAAATCTT GGAGAAAAAA
GAAATATCTC AATTAGAAAA AACTTCAAAA AAAATCCTAT CTGAAAATGA ACATACAGAA
TTGGTAAAAA CATTGGCTCT TCTGGTAAAA AAAGGAGTTG CATTTCATCA TGCCGGATTA
AATCAAAACT GTCGAGAAAT AATAGAAACA GAATTTAGAA ATGGGACTAT CAAATTGCTA
TCATCTACTC CAACTTTAGC TGCAGGAGTT AATTTACCTG CAAGAAGAGT TGTAATTTCT
AATGTAAATA GATACAATGC AAAGGTTGGT GCAAATAGAC CAATTAGTAT TCTAGAATAC
AAACAGCTTT GTGGAAGAGC AGGACGACCA CAATATGATA ATCATGGAGA ATCAATTATT
GTTGGTAATG GAAATACTGA TGATTTAATT GACTATTACA TTCATGGGGA ACCTGAACCC
ATTGAATCTA AAATTACTGA TGACAAATCA TTAAGAACAC ACTTGCTTAG TGTTATTGTA
ACAAATCCTG GAATTAAAAA AGAAGATATT CTAGAATTCT TTTTGCAAAC GCTTGGTGGT
ATGCAATCTC GTAAAGCAAC TGTAAAATTT GCAATTGATA TTTCCTTACG CTTTCTTTCT
AGTCAGTATT TGATTGTCAA AAAAGGTGAA AGATATGCTG CAACTGAATT TGGTAAAAAA
ACTTCAATGC TATACATTGA TCCACTTACA GCTACTTACT TTAGGGATGC ACTTGAAAAT
GTGTCTGAAG AAAGAAAACA CACATTTGGA TTCCTGCATT TAATTTCAAA TTGTGAAGAA
TTTTTCCCAA AATTCTCTCT AAGGCAAAAA GACTATGAAA CAGCAAGTCT TATGATAGAA
AACAATTCGT CAGAACTCTT AGAACCAATT TCAGAGTATG ATTGCTCTAG AAGTCTTTTG
GCCCTTCAGT CATGGATTAC TGAATCTACA GAATTAAACC TCTCTGATAG CCTTGGAATT
GAGTCTGGTG ATATGCATAG AATGACTGAA ACTGGGAATT GGCTTTGTTA CTGCCTAAGA
GAGATTGCAA AACATGTTGA ACGGGCAGAT TTGCTTGAAG AATTAGGCGA TTTACGCAGA
CGAATATCTT ATGGCATTAG AGAAGAATTA CTTGATCTAG TTAGGGTCAA AGGAATAGGT
AGAGTGCGAG CAAGAATTCT ATTCAAACAT GGAATCAAAA ATCTTGATGA TCTGGCAAAA
ATTCCTGTGA ATAAATTGGC AGAAATAGAT AAAATTGGTT CAACCATTGC GGATAACATC
AAGACAGAGT TACGAAGGGT TAGATATTGA
|
|---|
| Protein sequence | MKIEKLELPE SAIEFLKSQG FEKLYPPQAD SVKSGLLDGK NILVSAPTAS GKTLIAMLAM
MSYISKNKGK VIYLSPLRAL AAEKFSEFKK LEKVGLGNKT KVGISTGDFE NIEKNLEKNS
ILILTNEKMD SIIRHGAEWI DEIGLVIADE VHLIGDESRG PTLEMILTQL KLLETKPQIV
GLSATITNSD EIADWLECVL VENSWRPVPL SEGVCDAGEV TMADGTVFEV ERSIRGTPID
LGVQSVKDGG QSLVFAETRT RSKSLATKAA DAISQILEKK EISQLEKTSK KILSENEHTE
LVKTLALLVK KGVAFHHAGL NQNCREIIET EFRNGTIKLL SSTPTLAAGV NLPARRVVIS
NVNRYNAKVG ANRPISILEY KQLCGRAGRP QYDNHGESII VGNGNTDDLI DYYIHGEPEP
IESKITDDKS LRTHLLSVIV TNPGIKKEDI LEFFLQTLGG MQSRKATVKF AIDISLRFLS
SQYLIVKKGE RYAATEFGKK TSMLYIDPLT ATYFRDALEN VSEERKHTFG FLHLISNCEE
FFPKFSLRQK DYETASLMIE NNSSELLEPI SEYDCSRSLL ALQSWITEST ELNLSDSLGI
ESGDMHRMTE TGNWLCYCLR EIAKHVERAD LLEELGDLRR RISYGIREEL LDLVRVKGIG
RVRARILFKH GIKNLDDLAK IPVNKLAEID KIGSTIADNI KTELRRVRY
|
|---|
| |