| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4445 |
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| Symbol | |
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| ID | 4025456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007960 |
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| Strand | - |
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| Start bp | 91540 |
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| End bp | 93951 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637964953 |
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| Product | type IV secretion/conjugal transfer ATPase |
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| Protein accession | YP_571861 |
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| Protein GI | 92109574 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.346994 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGGCGC GCGCATTACT CGACGAACTG ACATTCGGTG CCGTGTCGCG GCGCGAGCGC
CCCGTCGCCT CCCACGTCCC CTACACCCGC CACGTCGACG ACCATATCAT CAAGACGCGC
GACGGCCTCG TCCTCACAAC CCTCAAACTC GACGGGTATT CCTTCGAGAC ATCCGACATG
AGCGAGGTCA ACGCGCGCCT TCTCGGCCGC AACGACGTCG TTCGCACGCT CGCGAACTCC
CGCTTCGCGC TCGTCTCCCA CATCGTCCGG CGCGAGGTCC AGCCACGGAT CGTGTCGACC
TTCGACAACG CGCTGTGCCG GGAGCTCGAC GAACGATACA ACGCCGCGCT CTCCAAACGG
CGCATGTTCG TCAACGACAT CTATCTCACC ATCATACGTC GACCGCTGCA GGGGCAAGCC
GGCACGTTCG ATGCGATGCT GACGCGACTT CTCGGTCGCA AGGACGTAGC CGGCGAATCA
GTCGCCATGC AGACCGCGTT GGCGGAGCTC CGCGACGCGG CGACCGCGGT GCGCGAGAAC
CTCGCCGGCT ATGGCGCACG GCAGCTCGGC GTCGTGCGTC GCGACGGTGT CTGGTTCTCT
GAGCCGCTCG AGTTCCTCAC GCTGCTGCTT AACGGCGGCC TTCCTCGTCC GATGCATCTG
CCACGCATGA ACCTCGCGGA CGCGCTGTCG ATGAAGCGCA TCTTCTTCGG ACACAACGCC
ATCGAGGTGC GGGGAGCCGG TCCCGAGGAC ACGCGCTTCG GGGCGATGGT GTCGATCCGC
GAGTACCCGG CTCAGACGGG ACCCGGCTCC TTCGACAACC TCCTGCGCGT GCCGCACGAG
TTCATCGCGA CGCAGAGCTT CGCGATCGTC GACCGCCCGG AGGCGGCCAA GCAGATCGAC
CGTGTATCGC GCCAAGTCGA TATGTCCGAT GAGGCGGGCT CGATTGTCTC GGAGCATCTC
GACGACGCTC GCGACGAGCT GCTCGCGTCG GAAGCGATCT ACGGCGAGCA CCACATGACC
GTGATGTGCC TCGGCCGCGA CCTTGCGGAG GTCGGCGCAG CGGTCACGGC GGTAGGCGCC
GCGCTGACCG ATCGCTCCGT AATCTGGACG CGCGAGGATC TCAATTGCGA ACCCGCGTTC
TGGGCGCAGC TGCCGGGCAA CTTCACCTAC ATCGCGCGCA AGGGCGTCAT CTCGTCGAAG
AATTTCGCGG GCTTCACCTC GCTGCACAAC TACCCGAGCG GCCGGCCGGC TGGCAATCAC
TGGGGCCCGG CGATTTCCGT GTTCGAGACA ACGTCGCAGA CGGCCTACTA TTATAATCAT
CACGTCCGCG ACATCGGCAA CTTCACCGTC GTCGGCCCGA CCGGGTCCGG CAAGACCGTC
TTCTTGTCAT TCATCGCCGC CCAGACACAA CGCATTCAGC CGCGGCCCAA GCTCCTGTTC
GTCGACAAGG ACCGCGGCGC CGAGATTTTC ATCCGTGCGC TGGGAGGCCA ATATGAGACA
CTCGTGCCCG GAGAACAGAC CGGCTTCAAT CCGCTCTCGC TACCGGACTC GGCGCCGAAC
CGAGAGTTCC TCTACCAGCT CTTCGCCTTC ATGCTGCGAC CCGGCAAAGG GGGCGAGCTC
AGCGCCTCGG AGGAGCAGGT GATCCGCAAC GCGATCGCGT CGGCGCTCGC GGCAGGGCCG
GCAGGCCGCA CGCTGAAGGC TTTCTCGACG CTGCTGCGCG GCCGCATCCG GGCAGGCGAG
GGCGACCTTC TCGCACGCCT CGAGAGCTGG ATGCGCCCCG ACCAGCGCGG CTGGCTCTTC
AACAATGACG AGGACAGGTT TTCGCTCTCC AGCGTGTTCG GTTTCGACAT GACGCGCGTG
CTCGACGACC CCGTCGTCCG CACCGCAGCT CTGATGTATA TTTTCCACCG GACGGACGAG
TTGCTGACAG GCGACCCCGT AATGATCTTC CTCGACGAAG GGTGGCGGCT GCTCGACGAC
GAGGTGTTCG CGTTTTTTAT TCGCGACAAG CTCAAGACGA TTCGTAAGCA GAACGGCATC
GTCGGCTTCG GCACACAGTC GGCGGCCGAT ATCGTGCGCT CGAAGGCGTC GAATACGCTG
ATCGAGCAGA CCAGCACCAA CATCTTTTTC CCAAACCCGA AAGCGGACGA CGAGAGTTAC
AAGCAGGCTT TCCGCCTCTC CGGCCGGGAG GTTGCGTGGA TCAGAGGCAC GGTACCGGAG
AGCCGCTCCT TCCTGATCAA GCATGGGCGC GACAGTGTCG TGGCGAAGCT CAACCTCGCC
AACATGCCGG ACCTGATCAA AGTGCTGTCC GGGCGCACGG AGACAGTCGC CGAACTCGAT
GCGTTGCGGG CGCGCGTCGG CGACGACCCG GCGGCGTGGC TACCGATCTT CATGGGGAGG
GCCCAGGGAT GA
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| Protein sequence | MVARALLDEL TFGAVSRRER PVASHVPYTR HVDDHIIKTR DGLVLTTLKL DGYSFETSDM
SEVNARLLGR NDVVRTLANS RFALVSHIVR REVQPRIVST FDNALCRELD ERYNAALSKR
RMFVNDIYLT IIRRPLQGQA GTFDAMLTRL LGRKDVAGES VAMQTALAEL RDAATAVREN
LAGYGARQLG VVRRDGVWFS EPLEFLTLLL NGGLPRPMHL PRMNLADALS MKRIFFGHNA
IEVRGAGPED TRFGAMVSIR EYPAQTGPGS FDNLLRVPHE FIATQSFAIV DRPEAAKQID
RVSRQVDMSD EAGSIVSEHL DDARDELLAS EAIYGEHHMT VMCLGRDLAE VGAAVTAVGA
ALTDRSVIWT REDLNCEPAF WAQLPGNFTY IARKGVISSK NFAGFTSLHN YPSGRPAGNH
WGPAISVFET TSQTAYYYNH HVRDIGNFTV VGPTGSGKTV FLSFIAAQTQ RIQPRPKLLF
VDKDRGAEIF IRALGGQYET LVPGEQTGFN PLSLPDSAPN REFLYQLFAF MLRPGKGGEL
SASEEQVIRN AIASALAAGP AGRTLKAFST LLRGRIRAGE GDLLARLESW MRPDQRGWLF
NNDEDRFSLS SVFGFDMTRV LDDPVVRTAA LMYIFHRTDE LLTGDPVMIF LDEGWRLLDD
EVFAFFIRDK LKTIRKQNGI VGFGTQSAAD IVRSKASNTL IEQTSTNIFF PNPKADDESY
KQAFRLSGRE VAWIRGTVPE SRSFLIKHGR DSVVAKLNLA NMPDLIKVLS GRTETVAELD
ALRARVGDDP AAWLPIFMGR AQG
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