| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4190 |
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| Symbol | |
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| ID | 4025630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007959 |
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| Strand | + |
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| Start bp | 148434 |
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| End bp | 150281 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637964737 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_571645 |
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| Protein GI | 92109357 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCTTCG GCGTTGCCGA TGTGGCGGCC GCAGCACGCA TCCCTCTCAG AGTGGACACA
CCCATGGCTC AAAACGTCAG CGATTTCATT TGGCATCGGC TTTCAGAGTG GGGATTGAAA
CGTGTCTACG GCTACCCGGG CGATGGAGTC GGCAGCCTGG ATGTGGCGCT GGAGAAGGCC
AAGGATGTCA TGGAATATGT CCAGGTGCGC CACGAGGAAA TGGCCGCCTT CATGGCATCC
GCTCATGCCA AATTCACCGG TCAAGTCGGT CTTTGCTATG CGACCTCCGG ACCGGGAGCG
ATCCATCTGC TCAACGGACT CTATGACGCC AAACTCGATC ACATGCCGGT GATCGCACTG
GTCGGCCAGC AGGCTCGCAC AGCACTTGGC GCGAGCTATC AGCAGGAAGT TGACCTGCAG
AACCTGTTCA AGGACGTCGC AAGTGAATTT GTCGGAATGG CGAGCGTCCC CGAGCAGGTT
CGCCATCTGA TCGACCGCGC GGTCCGGATT GCGCACACCA GACGGACAGT GACTTGCGTG
ATTTTGCCAA ACGACCTGCA GCAGCTCCCT TACGAAGACC CTCCGGTAGC ACATGGCGCG
ACACATACCG GCATCGGCTA TGCGGGGCCC GCAAAGCTGC CGGATGAAGC GCTGCTCCGT
GCCGCAGCCG ATGTGCTGAA CCGCGGCAAA AAGGTTGCGA TGCTGGTCGG TGCCGGAGCG
CTCGATGCGA CCGACGAGGT GATTGCCGTC GCGGAACGCC TCAAGGCAGG TGTCGCGAAA
GCGTTGTTGG GCAAGGCGGC CCTGCCGGAC GATCTTCCGT TCGTTACCGG TTCAATCGGT
CTGCTCGGGA CCAAACCGAG CTGGGACTTG ATGAAGGGAT GCGACACCTT CTTCATGGTC
GGCTCGTCCT TTCCTTACAG CGAGTTCCTC CCCGAGCCGG GTGCGGCGCG CGGTGTGCAG
GTCGACATCG ACGGTAGCCG GCTTAGCCTG CGCTATCCCA TGGACGTCAA CATGGTCGGC
GACAGTGCGA CTACCTTGCG TGCACTGCTG CCGATGCTGA AGCAAAAAAC CGACAAGGCG
TGGACTAAAG AAATTGAGAG CAATCTCAAG TCCTGGTGGC AGACGCTCAA GGATCGCGCG
ATGGATTCCG CGGAGCCGCT CAATCCTCAA CGCGTGTTCT ATGAGCTGTC GCCTCGGTTG
CCGGACAACG CCATCATCAC GGCCGATTCC GGATCGGTCG CCAACTGGTA TGCGCGCGAT
CTCAAGATCC GGCGCGGCAT GAAAGCCTCG CTCTCCGGCG GGCTCGCCTC GCTGGGCGCG
GGCACTCCTT ATGCCGTGGC GGGTAAAATG GCATTCCCGG ACCGCACCGT GATCGCCTGC
ATGGGCGATG GCGCGATGCA GATGAACGGC CTCAACGTCA TGATCACGAT CTCCAAGTAC
TGGAAGAAGT GGTCCAATCC GCGGCTGATC GTGCTCGTGC TCAACAACCG CGACCTCAAC
CAGGTCACCT GGGAAGAACG CATCCAGCTC GGCGCCGGCA AAACCGAATC GACCCAGAGC
ATTCCGGACT TTCCCTACCA TCGCTACGCG GAACTGATCG GGCTCAAGGG CATCTTCGTC
GATAACCCCG ACAAAGTAGG CGCCGCCTGG GATGAAGCCC TGTCGGCAGA CCGACCCGTG
ATCCTCGAAG CCTATACAGA TCCCAATGTT CCGCCGCTGC CGCCGCACAT CACGCTGAAG
GACGCGAAAA ACTTCATGAT GATGATGCGG GATGAGCCGG AACTCGGAAG CGTGTTGAAG
AATAGCGCCA AAGAACTTCT GACCAGTATC ATTCCCGGCA AGCGTTGA
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| Protein sequence | MPFGVADVAA AARIPLRVDT PMAQNVSDFI WHRLSEWGLK RVYGYPGDGV GSLDVALEKA
KDVMEYVQVR HEEMAAFMAS AHAKFTGQVG LCYATSGPGA IHLLNGLYDA KLDHMPVIAL
VGQQARTALG ASYQQEVDLQ NLFKDVASEF VGMASVPEQV RHLIDRAVRI AHTRRTVTCV
ILPNDLQQLP YEDPPVAHGA THTGIGYAGP AKLPDEALLR AAADVLNRGK KVAMLVGAGA
LDATDEVIAV AERLKAGVAK ALLGKAALPD DLPFVTGSIG LLGTKPSWDL MKGCDTFFMV
GSSFPYSEFL PEPGAARGVQ VDIDGSRLSL RYPMDVNMVG DSATTLRALL PMLKQKTDKA
WTKEIESNLK SWWQTLKDRA MDSAEPLNPQ RVFYELSPRL PDNAIITADS GSVANWYARD
LKIRRGMKAS LSGGLASLGA GTPYAVAGKM AFPDRTVIAC MGDGAMQMNG LNVMITISKY
WKKWSNPRLI VLVLNNRDLN QVTWEERIQL GAGKTESTQS IPDFPYHRYA ELIGLKGIFV
DNPDKVGAAW DEALSADRPV ILEAYTDPNV PPLPPHITLK DAKNFMMMMR DEPELGSVLK
NSAKELLTSI IPGKR
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