| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3596 |
|---|
| Symbol | |
|---|
| ID | 4031529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 3949783 |
|---|
| End bp | 3950979 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637972007 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_578784 |
|---|
| Protein GI | 92119055 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTGCAC CAGAGCGACC AACCGCGCCC GCGAACCTCA CGTGGCTGAT CCTGATCCTG
TCGCTTGCGC CCAGCGTCGG CCTTGGCCTC GGCCGCTTCG CCTACTCTCT GGTGCTGCCG
GACATGCGCG ACAGCCTCGG CTGGTCCTAT TCGTCGGCCG GCTTCATGAA TACCATCAAC
GCCGCCGGTT ATCTCGCCGG CGCGTTGATC GCGGCCTCGG TCGCGAGACG CTTCGGGCCG
GCCGCAAGCA CGCGCTGGTC GACGGCAGCC GCAGCGGTCT CGCTGGCGCT CTGTGCGCTG
ACGGGCAACT TCATCGTTCT CAGCTTCGCC CGATTGGTCG TCGGAATTGC CGCGGCGATC
GGATTCGTCG CCGGCGGAAC GCTGGCGGCA ACGATCGCGC AATCGCAGCC TGCGCGATCG
AACGTCCTGC TCAGCCTGTT CTACGCCGGT CCCGGCATCG GCATTCTCTT GTCCGGACTC
GTCGCGCCGT TCGTGCTGCA ATATTTCGGC CCGGGATCGT GGTGGATCGT GTGGTGGGCG
ATGACCGTGC TCGCCATCGC GATGACGGTG CCGATGTTCG TCGCGCGCCT CGATATCGCC
GCGAGCGGCC CGCAGACGGC GCGGGGGCGC TTCGCGATTC GCCCTGTCAT CATCTTACTC
GCCGCCTACT TCCTGTTCGG TGCGGGCTAT ATCGCCTACA TGACGTTCAT GATCGCCTAT
GTCCGTGACG GCGGCGGCGG CGCGCTGGCG CAAAGCGCGT TCTGGAGCCT GATCGGACTG
AGCGCGCTGG CGACGCCCTG GGTCTGGCGG CGCACGCTCG GCCTCGACCG CGGCGGCCTC
AGCATGACCA TCGTCCTCGG CGTCAATGCC ATTGGAGCCG CGATGCCGCT GCTCGGCCAT
ACGCCGCTTT TACTGGGATT ATCGGCGCTG GTGTTCGGCG TCGCGTTTTT CGCGGTGGTG
ACCTCGACCA CGGCGTTCGT GCGCTTCAAC TATCCGCCCG CGGCATGGCC GACCGCGATC
GCGGCGATGA CAATTTCGTT CGGCATCGGT CAGACGCTGG GGCCGGTCGT GGTCGGCGCG
ATCACCGACG CCATGGGCAG CCTGTCCTAT GCGCTCAACG TCTCGGCGGC GATGCTGGCG
GCCGGTGCGA TCCTCTCCGC CTTCCAGCGC CCGCTGCAGC GAGGCGCGCC GTCCTGA
|
|---|
| Protein sequence | MSAPERPTAP ANLTWLILIL SLAPSVGLGL GRFAYSLVLP DMRDSLGWSY SSAGFMNTIN
AAGYLAGALI AASVARRFGP AASTRWSTAA AAVSLALCAL TGNFIVLSFA RLVVGIAAAI
GFVAGGTLAA TIAQSQPARS NVLLSLFYAG PGIGILLSGL VAPFVLQYFG PGSWWIVWWA
MTVLAIAMTV PMFVARLDIA ASGPQTARGR FAIRPVIILL AAYFLFGAGY IAYMTFMIAY
VRDGGGGALA QSAFWSLIGL SALATPWVWR RTLGLDRGGL SMTIVLGVNA IGAAMPLLGH
TPLLLGLSAL VFGVAFFAVV TSTTAFVRFN YPPAAWPTAI AAMTISFGIG QTLGPVVVGA
ITDAMGSLSY ALNVSAAMLA AGAILSAFQR PLQRGAPS
|
|---|
| |