| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_3581 |
|---|
| Symbol | trmD |
|---|
| ID | 4030909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 3938487 |
|---|
| End bp | 3939203 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637971993 |
|---|
| Product | tRNA (guanine-N(1)-)-methyltransferase |
|---|
| Protein accession | YP_578770 |
|---|
| Protein GI | 92119041 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.554221 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCGCA CGACCGTCCT GACGCTGTTT CCCGAGATGT TTCCGGGGCC GCTCGGCTTG
AGCCTCGCCG GGAGGGCGCT CGTCGCCGGC CTGTGGGCGC TGGACGTCCG CGATATCCGC
TGCTCCGCCG CCGACCGTCA CCGTAGCGTC GATGACACCC CGGCCGGCGG CGGTCCGGGC
ATGGTGCTGC GCGCCGATGT GCTTGCCAAA GCCATCGACG CGGCGGAGTT TTCGCCGGAC
AGGCCACGCC TGCTGATGAG TCCGCGAGGT CGGCCATTGA CCCAGTCACA GATCGTAGAA
TTGTCCGCAG GGCCGGGGCC GCTGATTGTC TGCGCGCGGT TCGAGGGGGT GGACCAGCGG
GTCATCGAGG CCCGCGGGCT CGCGGAGGTG TCCATCGGAG ATTATGTGCT GTCAGGGGGC
GAAATCCCCG CGATGGCGCT GATCGACGCC TGTGTCCGGC TTTTGCCGGG CGTGATGGGC
AAGGCGGAAT CCGGCGCAGA CGAGAGTTTT TCGCACGGAC TGCTTGAATA TCCCCAATAC
ACCCGCCCGC AGCAGTTCGA GGGCCGCCCG ATCCCCGACA TCCTTCTGTC CGGCGACCAC
GCCAAAGTAG CGGCCTGGCG ACGGGCCGAG GCGGAAGCCC TCACGAAGGC CCGCCGGCCC
GACCTCTGGA CGGCATGGGC CGGGCAAAAT CCGCCAAAAA GCAACACAGA CGGGTGA
|
|---|
| Protein sequence | MWRTTVLTLF PEMFPGPLGL SLAGRALVAG LWALDVRDIR CSAADRHRSV DDTPAGGGPG
MVLRADVLAK AIDAAEFSPD RPRLLMSPRG RPLTQSQIVE LSAGPGPLIV CARFEGVDQR
VIEARGLAEV SIGDYVLSGG EIPAMALIDA CVRLLPGVMG KAESGADESF SHGLLEYPQY
TRPQQFEGRP IPDILLSGDH AKVAAWRRAE AEALTKARRP DLWTAWAGQN PPKSNTDG
|
|---|
| |