| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1352 |
|---|
| Symbol | |
|---|
| ID | 4031823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 1529896 |
|---|
| End bp | 1532682 |
|---|
| Gene Length | 2787 bp |
|---|
| Protein Length | 928 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637969828 |
|---|
| Product | helicase-like |
|---|
| Protein accession | YP_576636 |
|---|
| Protein GI | 92116907 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTCA ATCCGCTGGG CCGCTCCACC AGTCTCGTCG GAGGCGGCAA TCTTCAGCGG
TTTTCGTCCA GGCTCGGCCG GCTATCACAC GTCTACTTGA AGGACCAGCT CAAGGGCGCT
TCGGAGTATC GGCGGATCGC CGGCTATTTC CGGTCCTCGA TTTTCGACCT GATCAACGAG
GAGATCGAAG GGATCGGCAA AGTCCGGATC GTCTGCAATT CCGATCTCGA TCAGTTGGAC
ATCGACGCGG CGCAAAAGGC CCGCGAGCAG CTTCTCAAGG AAAAGTGGAA CGACGTCGAC
GACGCCGTCG AGAGCTTTTT TCGCCGGCCG CGATACCAGC GGCTTTATGA GATTCTCACC
CGCGGGAACG TCGAAATCCG AGTGGTTTCC CGGAAGCAGG CGCCCTTCGT GCATGGCAAG
GCCGGGGTCA TCTACCGTCC GGACGGGACA TCGTCCGCCT TCATGGGCAG CCTTAACGAG
ACCCGCGAGG GCTGGTCGGC CAATTACGAA TTCGTCTGGG AAGACACGTC AGCCGACGGG
GTAGCCTGGG TCGAAGACGA ATTCGAATAT CTGTGGGAGC TCGGCAAGCC GCTTCCGGAC
GCGATCATCG AGGAAATCGG CCGCAGCGCC CGCCGGATCG AAGTTCAGCT CGCGGACCTG
AAGCCGTCGG AAGTGGCGCC GGCCGCCTTG GTGGAAGCCG ACATCTATCG CAAGGGCGAG
GAGCTGATGC CTTGGCAGCG GGCATTTGTG TCGCTGTTTC TGGAGCACCG CGAAACTTAC
GGAAGCGTCC GCCTGTTGCT CGCCGACGAG GTCGGGGTCG GCAAGACCCT GTCGCTCGCC
GGCGCCGCCC TGGTCTCGGC CTTGCTGGGC GATGGCCCCG TCCTTATCCT CTGCCCGGCG
ACGCTCACCA CCCAGTGGCA GATCGAACTC AAGGACCGCC TCAATATTCC TTCAGCCGTT
TGGCTTTCGA CTGAAAAGGC ATGGCGGCTG GACCCCGACG AGATTCCGAT GCCGTCGATC
GGCGCTGCGG GCGTCGTCAA ATGTCCGCGC CAGATCGCGA TCGTCTCGAC CGGTCTCATC
TTCCATAACA CGGAAGAACG GAAGCATCTG ATGTCACGGT CGTTCGGCAT GGTCATCCTG
GACGAGGCGC ACCGGGCCCG CGGGAAGGAG GATCCGGAGG AGAAGGAGCG AACCGCAAAC
AACCTCCTGT CCTTTATGTT CGAGATCGCC AAGCGGGCAC GGCATGTCCT CCTGGGTACC
GCGACGCCGA TTCAGACGGA CGTCGAGGAC ATGTGGGACC TTCTCAAGAT CCTCGGGATG
GGGGCCGAGC ACGTAATCGG GGACGCCTGG AGCGACTGGC GGTCCACCGA GAAGGCCGTC
CCGATTATCA CTGGCAAGAA CAAGGTGACG TCCGAACGCG AAGCTTGGCC GCTATTCCGC
AACCCGCTTC CCGCTGCGGC CGAGAATGAT GTGATTTTCG GGTTCGTCCG GGACGCGATC
CAGCTTCGGC CCGATCGCTT TGTCACCCAA GTCAGCTTCA GTGACATCAA CGACGCCTTC
TGTCGCGATC AGTTCGTCGA CGACGTGCTG ACGCCGAAGG ACGATCTCGG CTTCTTCCAG
CGCAACAACC CGGTGGTGCG GCACGTGGTG CTGCGGAAGC GGTCAACGCT GGAGCGCATG
GGCCTGATCC CCAGGATCCC GGTCGACATC CATCCGTTGC CTGGCTCGCA CATGCCGCCG
ATGTTCAACG GCTTGGGTCT TGGGACATCG CACGCGTTCG ATATGGCATA TGAGGCGGCT
GACAAGTTCA CGAAGGTTCT ACGCAAACGG AAGAAATCGG CCGGTTTCAT GCGCAGCCTG
ATGCTGCAGC GCCTGTGTTC GAGCTACGCA AGCGGCCTGG CCACCGCTGA AAAGCTGCTC
GCCGGGCGGT CCTTGGACGA CGAGGAGCTC GAACTTGAGC TCGGCGATGA GGGGCTGACC
TTGATCGACG AGGAGCGGCG GCACCTCCAG ACCATCATCG ACGTCCTGTC GCCCCATCCG
ACGGACCCGA AGTTCGACGC GGTCCTATAT TTCTTGGAAG AAAGGCGATG GCTGGAGCTC
GGCTGCATCG TTTTCAGCCA GTATTTCGAC ACGACCAAGT GGGTGGCCGA GGGGCTGACT
GGGCGGCTTC CGCGGGAGCC GGTGGCGGTC TACGCCGGCG CCGGGAAATC GGGAATCTAC
ATCAACGGTG AGTGGAAGAG CGTCGAACGC GAGCAAATCA AGAGGGCGGT CAAGGAGCGG
ACGATCAGGC TAATTGTGGC CACCGACGCC GCCTGCGAGG GTCTGAACCT CCAGACGCTG
GGGACCCTGA TCAACGTTGA TCTTCCCTGG AATCCTTCCC GGCTCGAGCA GCGCATCGGT
CGCATCAAAC GGTTCGGCCA ACGCCGCGAT CGCGTGGACA TGCTCAATCT CCTCTACCAT
GGCTCTGCTC AACCCACGGT GGACGAGAAG GTCTACGCAA AGCTGTCCTC CCGCATGAAG
GATCGGTTCG ACATTTTCGG GACGTTGCCC GACGTCATCG ACGACGACTG GATCGACGAT
GAGGAGAGAC TCGAGGCCGA ATTGAAGAAC TACACAAACC GCCGCGCGCG GGCCAACGCG
TTCGATCTGC GGTACGCCGG CGACGTCGTG CCAAAGGATG AGCGCTGGGA GCTCTGCGAG
AAGGTTCTAG CCCGGAACGA CGTCAAGAAG CGGCTATCGC GGGGCTGGGG CGAACGGGAT
CGTGCCGATC AATCGGTGCC AGCATAA
|
|---|
| Protein sequence | MDVNPLGRST SLVGGGNLQR FSSRLGRLSH VYLKDQLKGA SEYRRIAGYF RSSIFDLINE
EIEGIGKVRI VCNSDLDQLD IDAAQKAREQ LLKEKWNDVD DAVESFFRRP RYQRLYEILT
RGNVEIRVVS RKQAPFVHGK AGVIYRPDGT SSAFMGSLNE TREGWSANYE FVWEDTSADG
VAWVEDEFEY LWELGKPLPD AIIEEIGRSA RRIEVQLADL KPSEVAPAAL VEADIYRKGE
ELMPWQRAFV SLFLEHRETY GSVRLLLADE VGVGKTLSLA GAALVSALLG DGPVLILCPA
TLTTQWQIEL KDRLNIPSAV WLSTEKAWRL DPDEIPMPSI GAAGVVKCPR QIAIVSTGLI
FHNTEERKHL MSRSFGMVIL DEAHRARGKE DPEEKERTAN NLLSFMFEIA KRARHVLLGT
ATPIQTDVED MWDLLKILGM GAEHVIGDAW SDWRSTEKAV PIITGKNKVT SEREAWPLFR
NPLPAAAEND VIFGFVRDAI QLRPDRFVTQ VSFSDINDAF CRDQFVDDVL TPKDDLGFFQ
RNNPVVRHVV LRKRSTLERM GLIPRIPVDI HPLPGSHMPP MFNGLGLGTS HAFDMAYEAA
DKFTKVLRKR KKSAGFMRSL MLQRLCSSYA SGLATAEKLL AGRSLDDEEL ELELGDEGLT
LIDEERRHLQ TIIDVLSPHP TDPKFDAVLY FLEERRWLEL GCIVFSQYFD TTKWVAEGLT
GRLPREPVAV YAGAGKSGIY INGEWKSVER EQIKRAVKER TIRLIVATDA ACEGLNLQTL
GTLINVDLPW NPSRLEQRIG RIKRFGQRRD RVDMLNLLYH GSAQPTVDEK VYAKLSSRMK
DRFDIFGTLP DVIDDDWIDD EERLEAELKN YTNRRARANA FDLRYAGDVV PKDERWELCE
KVLARNDVKK RLSRGWGERD RADQSVPA
|
|---|
| |