| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1225 |
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| Symbol | |
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| ID | 4032277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 1383530 |
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| End bp | 1385410 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637969704 |
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| Product | peptidase M3B, oligoendopeptidase-related clade 3 |
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| Protein accession | YP_576513 |
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| Protein GI | 92116784 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1164] Oligoendopeptidase F |
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| TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.100343 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTCGC GTTCTCCCTC CGCTTCACGC AAACCCGCCG CCCCCCGCAA CCCCGCCTCT
CATCGCAAGC CCGCCGTGAA AAAGGCTGCC GTCGCGAAAC CGGATGCGGG ACGTCTGCCG
GAATGGAATC TCGCGGACCT CTATGCCGGA ATCGATGCGC CCGAGGTGAC GCGCGATCTC
GACAAGGTCG ATGCGGACTG CGAGGCGTTC GAGGCCGACT ACAAGGGCAA GCTCGCCGAA
GAGACCGCGA AACCCGATGG CGGCGCGTGG CTGGCCGACG CCGTGCGGCG CTATGAGGCG
ATCGACGATC TCGCCGGGCG GCTCGGTTCG TATGCGGGGT TGATCCACGC CGGCGACAGC
GTCGATCCGG CGATCTCGAA ATTCTACGGC GACGTCTCCG AGCGTCTGAC GACGGCCTCG
GTGCATCTGT TGTTCTTCGC GCTCGAACTC AACCGCATCG ACGACGACGT GATCGAGCGC
GCCATGCAGA CGCCGGAGCT TGGGCATTAC CGCCCGTGGA TCGAGGACAG CCGCAAGGAC
AAGCCGTACC AGCTCGAGGA TCGTGTCGAG CGGCTCTTCC ATGAGAAGTC GCAGACCGGC
TATTCCGCCT GGAACAGGCT GTTCGACCAG ACCATTGCCG GGTTGCGCTT CAGGGTCGGG
ACCAGGGAGC TGGCGATCGA ACCGACTCTG AACCTGTTGC AGGACCGCTC CCCCGAAAGG
CGCAAGGCGG CCGGGCAGGC GTTGGCGAAG ACGTTCAAGG CCAACGAGCG AACCTTCGCG
CTCATCACCA ACACGCTCGC CAAGGACAAG GATATTTCCG ACCGCTGGCG CGGCTTTCAG
GACGTCGCGG ATTCGCGCCA TCTGAACAAC CGCGTCGAGC GCGAGGTGGT GGATGCGCTG
GTGGCCTCGG TGCGCGCGGC CTATCCGCGG CTGTCGCATC GCTACTACGC GCTGAAGGCG
CGCTGGTTCA AAAAGAAGAA GCTCGCGCAT TGGGACCGCA ACGCGCCGCT GCCGTTCGCC
GCCACCGGCG TCATTCCGTG GACCGACGCG CGCAAGATGG TGCTGACCGC CTATGGCGAT
TTCTCGCCGA AAATGGCCGG CATCGCCGAA CAGTTCTTCA CCGATCGCTG GATCGATGCG
CCGGTGCGTC CCGGCAAGGC GCCGGGCGCG TTCTCGCATC CGACCACGCC GTCGGCGCAC
CCTTACGTGC TGATGAACTA CCAGGGCAAG CCGCGCGACG TGATGACGCT CGCGCACGAA
CTGGGTCACG GCGTGCATCA GGTGCTGGCG GCGAAGAACG GCGCGCTGAT GGCGCCGACG
CCGCTGACGC TTGCGGAAAC CGCGTCAGTC TTCGGCGAGA TGCTGACCTT CAAGCGTCTG
CTGGCGCAGA CGAAGAACGC GAAGCAGCGG CAGGCGCTGC TGGCCGGCAA GGTCGAGGAC
ATGATCAACA CGGTGGTGCG GCAGATCGCG TTCTATACGT TCGAGCGCGC CGTCCACACC
GAGCGCAAGA ACGGCGAACT GACCGCCGAA CGCATCGGCC AGCTCTGGCT CAGTGTGCAG
GGCGAAAGCC TCGGGCCGGC GATCGAGATC AGGCCGGGCT ACGAGACCTT CTGGATGTAC
ATTCCGCACT TCATCCATTC GCCGTTCTAC GTCTACGCCT ATGCGTTCGG AGATTGCCTC
GTGAACTCGC TCTACGCGGT CTATGAGCAC GCGTCCGAAG GGTTCGCCGA TCGCTATCTC
GCGATGCTCG CCGCCGGCGG CACCAGGCAC TATTCCGAGC TGCTGAGGCC GTTCGGGCTC
GACGCCAGGG ATCCGAAATT CTGGGACGGT GGATTGTCGG TCATTGCCGG AATGATCGAT
GAGCTGGAGA CGATGAGATA G
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| Protein sequence | MASRSPSASR KPAAPRNPAS HRKPAVKKAA VAKPDAGRLP EWNLADLYAG IDAPEVTRDL
DKVDADCEAF EADYKGKLAE ETAKPDGGAW LADAVRRYEA IDDLAGRLGS YAGLIHAGDS
VDPAISKFYG DVSERLTTAS VHLLFFALEL NRIDDDVIER AMQTPELGHY RPWIEDSRKD
KPYQLEDRVE RLFHEKSQTG YSAWNRLFDQ TIAGLRFRVG TRELAIEPTL NLLQDRSPER
RKAAGQALAK TFKANERTFA LITNTLAKDK DISDRWRGFQ DVADSRHLNN RVEREVVDAL
VASVRAAYPR LSHRYYALKA RWFKKKKLAH WDRNAPLPFA ATGVIPWTDA RKMVLTAYGD
FSPKMAGIAE QFFTDRWIDA PVRPGKAPGA FSHPTTPSAH PYVLMNYQGK PRDVMTLAHE
LGHGVHQVLA AKNGALMAPT PLTLAETASV FGEMLTFKRL LAQTKNAKQR QALLAGKVED
MINTVVRQIA FYTFERAVHT ERKNGELTAE RIGQLWLSVQ GESLGPAIEI RPGYETFWMY
IPHFIHSPFY VYAYAFGDCL VNSLYAVYEH ASEGFADRYL AMLAAGGTRH YSELLRPFGL
DARDPKFWDG GLSVIAGMID ELETMR
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