| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_1081 |
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| Symbol | |
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| ID | 4031609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | + |
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| Start bp | 1216916 |
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| End bp | 1218040 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637969579 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_576389 |
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| Protein GI | 92116660 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.157732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGTCTC ATCGCTCTTT CTCCTGGTCT TCCAAGTTCT TCTGGTCCTC CAGGTATTTG
CCGTTCGTTT TGGTCATCCT TCCGGCGCTG GCGCTGGGAG GCTGCAATGA ATCGGTCGCC
GAGAAGGCCG AGCCGGCCCG CCCGGTTCTG ACCGCCACCG TGCATTACGA GGCGGAGACG
CCAGACCGTA GCTTCGTCGG CACCATCAAG CCGCGGATCG AGACCGACAT GGGTTTCCGG
GTGCCCGGCA AGGTCGCGAA GCGCCTCGTC GAGGTCGGCC AGACCGTTGA AGTCGGCCAG
CCGCTCGCCA CCCTTGATGA AGTCGATCTC AAATTGCAGG CCGAGCAGGC GCAGGCGGAA
TTGAATGCGG CCACCGGCGT GCTGGCGCAG GCCGCCGCCG CCGAGCATCG TGCGCAGGAA
CTGCGGACGA AAGGCTGGAG CACCGACGCG CAGCTCGATC AGGCCAAGGC CACCGCCGAC
GAAGCGCGGG CACGGCTGAA CCGCGCGCAG CGCTCGGTCG AACTGACCCG GAATTCTCTG
TCCTATGCGA CGCTGACGTC CGACACCCGC GGCGTGGTGA CTGCGACGTT GGTCGATGCC
GGGCAGGTGG TCGCCGCGGG TCAGGGCGCG ATCCGCGTCG CGCGCCTTGG TGAAAAGGAA
GCGGTTGTTG CGATTCCGGA AACGCTGATC GGTCGCGCCA GGACCGGCAC CGCGCGCGTG
TCGCTGTGGT CGGAGCCCGG CAAGACCTAT GCGGCGAAAC TGCGCGAGAT CGCGCCGACC
GCCGATCCCG CGACCCGCAC CTATCTCGCC AAGTTCTCGC TGCCGGATGC CGACGACAAG
GTTTCGCTCG GCATGACGGC TACGCTGACG CTTGCCGACG CCGCCACTTC GCGCGTGGCG
CGGGTGCCGC TGTCGGCGCT GTTCAGCCAG GGCGGACCGT CGCCGCTCTA TGTCGTCGAT
GACAAAGGCG ACGTCGCGCT GAAGCCGGTC GCTGTCAAAT CCTACGAGAG CAACGACGTC
ATCATCACCG GCGGTGTGGG CGAGGGCGCG AAGGTCGTCG TGCTCGGCGT GCAGAAACTC
GATCCCGCGC AGAAGGTGCG GGTGGTGTCG TCGCTGTCGT TCTGA
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| Protein sequence | MLSHRSFSWS SKFFWSSRYL PFVLVILPAL ALGGCNESVA EKAEPARPVL TATVHYEAET
PDRSFVGTIK PRIETDMGFR VPGKVAKRLV EVGQTVEVGQ PLATLDEVDL KLQAEQAQAE
LNAATGVLAQ AAAAEHRAQE LRTKGWSTDA QLDQAKATAD EARARLNRAQ RSVELTRNSL
SYATLTSDTR GVVTATLVDA GQVVAAGQGA IRVARLGEKE AVVAIPETLI GRARTGTARV
SLWSEPGKTY AAKLREIAPT ADPATRTYLA KFSLPDADDK VSLGMTATLT LADAATSRVA
RVPLSALFSQ GGPSPLYVVD DKGDVALKPV AVKSYESNDV IITGGVGEGA KVVVLGVQKL
DPAQKVRVVS SLSF
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