| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0712 |
|---|
| Symbol | |
|---|
| ID | 4031511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 785232 |
|---|
| End bp | 788405 |
|---|
| Gene Length | 3174 bp |
|---|
| Protein Length | 1057 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637969246 |
|---|
| Product | hydrophobe/amphiphile efflux-1 HAE1 |
|---|
| Protein accession | YP_576057 |
|---|
| Protein GI | 92116328 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTTC CCCATTTCTT CATCGACAGG CCGATCTTCG CGAGCGTGGT TTCAATTATC
CTGACGCTTG TCGGCGTGAT CGCCCTTCGC GCGCTACCGA TCACTGAATT TCCTGAAATC
GCTCCGCCGA CTATCGAGGT GACGGCAACC TATGCTGGTG CTGCGGCCGA TATCGTGGCC
GAGACTGTCG CCTCGCCGAT AGAGCAGGAG ATCAACGGCG TCGACAACAT GATTTATATG
GTGTCGCAAT CGACCGGCGA CGGCACGACA AAGATTGACG TAGTCTTCAA GCCCGGCACG
AATATCGACG ATGCGCAGGT GCTGGTGCAG AACCGGGTCT CGATCGCGTC GCCGCGTTTG
CCGGAAGAGG TGCAGCGTGT CGGTGTGACC GTCAAGAAAA AATCACCTGA CCTGATGATG
GTGATTCATC TGATCTCACC CGACGGCGCG CTCGATCAAT CGTATATTTC GAACTACGCG
ACCATCAATA TCAAAGATGT GCTTACCCGT GTCGACGGGG TGGGTGATAC GATCGTGTTT
GGCGCGCGTG ACTATTCCAT GCGGATTTGG CTTGATCCGG CCAAAGTGCA ATCGCGCGGT
CTGACGGCGA GCGATGTGAT CACCGCCTTG CGCGGCGCCA ACATTCAGGT CGCCGCTGGC
GCCATCAATC AGCCGCCCGC GAAATCTCCG GTTGGATTCG AGGTGGCGGT GCAGACACTG
GGTCGGCTGT CCAGTCCGGA GCAGTTTAGC GACATCATCG TCGCGACCGA TCAGGACGGC
GGGGTGACGC GGGTGCGGGA TATCGCTCGG GTTGAGCTTG GCGCGTATAC CTACACCACG
AACGCTTATC TCGATGGCAA GGTCGCGACC GCAATCGGCA TATTTCAGCG TCCCGGCTCA
AATGCGCTTA AGACCGCCGC CGCTGTAATC GCAACGATGG ACGAGCTTGC GAAGAACTTT
CCCCCCGGTC TCGGCTACCG CATCGCATAC AATACCACCG AATTCGTTCA GCAATCGGTC
GACGAGGTGA TCCGAACCTT GTTCGAGGCG CTTGTCCTGG TGGTGCTCGT CATCATCCTA
TTCTTGCAGA CATGGCGTGC CGCGATCATT CCTGTGGTCG CTATTCCGGT GTCTTTGATC
GGCACGTTCT TCGTGTTGGA GGCTTTTGGC TTCTCGCTGA ACAACCTGAC GCTCTTCGGG
CTTGTCCTCG CCATTGGCAT CGTCGTGGAC GACGCTATCG TCGTGGTCGA GAACGTCGAA
CGTTATCTGC GTCAGGGCCT GAGCCCGCGC GAGGCTGCTC ACAAAACCAT GGATGAGGTT
GGTGGCGCTT TGATCGCGAT CGCGCTGGTC CTTTGCGCGG TGTTCATTCC CTCCGCATTC
ATCGCCGGTA TTTCCGGCGC ATTTTATCGG CAGTTCGCTC TCACCATCGT GTCCTCGACG
ATCATCTCGG CCATCGTGTC GTTGACACTG TCGCCGGCGT TGGCGGCACT GTTCCTGCGG
CCGCATGGCC ATGAACAAAA GCCGGGCTTC TGGATGACCG TCGGCCGGCC ATTCAATGCC
TTCTTTGCCG GATTCAACAG AGGCTTCGAT AAGCTTTCGA GTGGCTATGC GGGATTGACC
AGACGGGTGC TGCGAATCCT GGCGTTGATG CTGTTCGTCT ATGCCGGCCT GATTGGCCTG
ACCTACTTCC AGTTCGCCCG CACGCCGTCT GGGTTCATCC CGCCGCTGGA TCGCGGCTAT
TTCATCACGG CGATCACTTT GCCGCCGGGT TCTAGCCTCG AACGCACCGA TGCCGTCATC
CGCAAGGCAT CGGACCTTCT GCTATCGCGG CCAGGCGTCG CCCACACCGT GACTTTCGCC
GGGTTCGACG GCGCGACTTT CACGAACGCT CCCAATTCCG GTGTTCTTTT CGTTACCCTT
AAGCCTTTCG AGGAAAGGGT AAAAGAGAAG CTCAAGACTG AAACGATCCT TAATGATCTG
CGAGCGCAGG TGCGAGCGTT GCGCGAGGCC TTCGTTCTGG TCATTCCACC GCCCTCGGTC
CCCGGCATCG GAACGGGCGG CGGCTTTAAA CTCTATGTCC AGGATCGCGC TGGCCGCGGT
CCGCGTGCGC TGGAGCGAGT CGTCGGCGCA ATAACCGGCA TGGCTAACCA GACCCCTGGG
CTCGTTCAGG TCTTCACGCT GTTTAACGCC GCGACGCCAC AGGTTTTTGC CGACATCGAC
CGCACAAAGG CCGAGATACT CGGTGTGCCG ATCTCGCGTT TCTTCGACAC GCTGTCGACC
TATATGGGCT CGACCTACGT CAATGACTTC AACATCCTGG GGCGCACCTA TCGGGTGACT
GCACAGGCCG ACAATCCATT CCGGCTTTCG ACGCGCGATG TGGAAGCCTT ACGGACCCGT
TCGAACGCAT CGGAAATGGT GCCGCTCGGT GCGGTTGCAA CTTTCAGCAA TATCACCGGA
CCGTACCGCG TGCCGCGCTA CAATCTTTTC CCCGCGGCTG AGGTGCAGGG TGCCACGACG
CCCGGGTTTT CGACGGGGCA GGCGATTGCC TCAATGGAAA GTATTCTGGC CAAGAACTTG
CCGTCCGGTT TTGGCTTCGA ATGGACCGAG ATCGCCCTGC AGGAGAAAGT TGCTGGCAAT
ACCGCCGTCA TCGCATTCAG CTTCGCGGTG GTGTTCGTGT TTCTGTTGCT GGCCGCGCAA
TACGAAAGTG TATTGCTGCC ACTTGCGGTG ATTTTGATTG TGCCGATGTG CCTGCTTGCC
GCAGTCAGCG GCGTGCTGTT GCGCGGCATG GACAACAATA TCCTGACTCA GATCGGCTTT
GTCGTATTGA TCGGCCTCGC CGCCAAGAAT GCCATTCTTA TCGTGGAATT TGCACGCCAG
GCGGAGGAGG GGGGCGCCAG TCGCTGGGAT GCTGCGGTGC AAGCGGCGCG TACGCGGCTG
CGCCCGATCC TGATGACGTC GCTCGCGTTC ATCCTCGGCG TCGTGCCATT GGTGATTGCG
ACGGGGGCGG GTGCGGAACT CCGTCAGGCG CTCGGCACAG CGGTCTTCTT CGGCATGCTC
GGCGTGACGC TGTTCGGTCT CGTGTTCACG CCTGTGTTCT ATGTTCTGGT GCGCTGGATC
GCGTCGATCT CCTTCCGCCG TGGCACGGCC GACACGACGC AAGATCCTTC ATAA
|
|---|
| Protein sequence | MRFPHFFIDR PIFASVVSII LTLVGVIALR ALPITEFPEI APPTIEVTAT YAGAAADIVA
ETVASPIEQE INGVDNMIYM VSQSTGDGTT KIDVVFKPGT NIDDAQVLVQ NRVSIASPRL
PEEVQRVGVT VKKKSPDLMM VIHLISPDGA LDQSYISNYA TINIKDVLTR VDGVGDTIVF
GARDYSMRIW LDPAKVQSRG LTASDVITAL RGANIQVAAG AINQPPAKSP VGFEVAVQTL
GRLSSPEQFS DIIVATDQDG GVTRVRDIAR VELGAYTYTT NAYLDGKVAT AIGIFQRPGS
NALKTAAAVI ATMDELAKNF PPGLGYRIAY NTTEFVQQSV DEVIRTLFEA LVLVVLVIIL
FLQTWRAAII PVVAIPVSLI GTFFVLEAFG FSLNNLTLFG LVLAIGIVVD DAIVVVENVE
RYLRQGLSPR EAAHKTMDEV GGALIAIALV LCAVFIPSAF IAGISGAFYR QFALTIVSST
IISAIVSLTL SPALAALFLR PHGHEQKPGF WMTVGRPFNA FFAGFNRGFD KLSSGYAGLT
RRVLRILALM LFVYAGLIGL TYFQFARTPS GFIPPLDRGY FITAITLPPG SSLERTDAVI
RKASDLLLSR PGVAHTVTFA GFDGATFTNA PNSGVLFVTL KPFEERVKEK LKTETILNDL
RAQVRALREA FVLVIPPPSV PGIGTGGGFK LYVQDRAGRG PRALERVVGA ITGMANQTPG
LVQVFTLFNA ATPQVFADID RTKAEILGVP ISRFFDTLST YMGSTYVNDF NILGRTYRVT
AQADNPFRLS TRDVEALRTR SNASEMVPLG AVATFSNITG PYRVPRYNLF PAAEVQGATT
PGFSTGQAIA SMESILAKNL PSGFGFEWTE IALQEKVAGN TAVIAFSFAV VFVFLLLAAQ
YESVLLPLAV ILIVPMCLLA AVSGVLLRGM DNNILTQIGF VVLIGLAAKN AILIVEFARQ
AEEGGASRWD AAVQAARTRL RPILMTSLAF ILGVVPLVIA TGAGAELRQA LGTAVFFGML
GVTLFGLVFT PVFYVLVRWI ASISFRRGTA DTTQDPS
|
|---|
| |