| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0148 |
|---|
| Symbol | |
|---|
| ID | 4029457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 167003 |
|---|
| End bp | 168214 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637968682 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_575509 |
|---|
| Protein GI | 92115780 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGGA TAAGAATGAC GGACCCGTTC AAACCGAAAC CTGAGCGTCC GGGCGCGACC
CGTCGAGCGG TGTTGGGTTT TGTCGTTGGA GCGCCCTTGC TCGGTGCCTG CTCGGGTATC
CAGCAAACGC TGACCGGTTC TTCCTCGCAG CCGGCGCCGT CCGGGCCGGC TCAGCAGGCC
GTTACCATCG GAACGGGCCA GGTCAAGGTC GGACTGGTTC TCCCGCTGTC GGCTGCAGGC
AATGCGAGCA TTGCGGCGCA GTCGATGAAG AATGCGGCTG AAATGGCACT GTCGGAGTTT
CAGAACCCGA ACATCCAGCT GCTGATCAAG GACGATGCCG GCTCGGCGCA AGGCGCGCAG
CAGGGAGCGC AACAGGCCCT TGACGAAGGC GCAGAAGTCA TTCTCGGTCC GTTGTTCGCA
GCGTCGGTTC CGGCGGTCGC TCAGGCGGCC CGGACGCGCG GCACTTCGGT AATCGCGTTC
TCGACCGATT CGAGCGTTGC GGGCCGGGGC GTCTATCTTC TGAGCTTTCT CCCTGAATCG
GACGTGAACC GGATCGTCGA ATATGCCGTG AGCACGGGAA AACGCTCGTT TGCCGCGATG
GTGCCCGAAA ATGCCTATGG CAATGTCGTT GAAGCCGCCT TCAAGCAGAC GGTCGGCCGG
CGCGGCGGGC GCATCGTCGC ATTCGAGAAA TATGGCGCCG ATCGTGCCGG CGCGGCGCGG
AAGGTGGCGC AGTCGCTTCG CTCGGCTGAT GCGCTGCTCA TCGCCGATGA CGGCGATGCG
GTGGTTTCGG TTGCCGACGC GCTCACGGCG GCAGGTGCCA ATCTGCGCAA TGTCCAGCTT
CTTGGAACGG GGCTGTGGGA CAATCCTCGC GTATTCGCCA GCGCGGCGCT GCAAGGCGGT
CTCTATGCCG CTCCCGACCC CTCCGGCTTC CGCAGCTTCG CAGGCCGCTA CCGTGCCAAA
TACGGCGGTG AGCCGGTGCG CACGGCAACC CTTGCTTATG ATGCCGTCGC ACTGGTGGCG
GCTCTTGCGC GAACCCAGGG TGCGCAGCGC TTCGCGGCGG AGACGCTGAC CAATCCGTCG
GGCTTCGCCG GCATCGACGG GTTGTTTCGA TTCCGTTCCG ACGGCACCAA CCAGCGCGGC
CTTGCCGTCA TGCGTGTCGC ATCGGGCGGC GGCGAGCCGA TCGCCGGCTC GCCAAAGAGT
TTCGGCGCCT GA
|
|---|
| Protein sequence | MARIRMTDPF KPKPERPGAT RRAVLGFVVG APLLGACSGI QQTLTGSSSQ PAPSGPAQQA
VTIGTGQVKV GLVLPLSAAG NASIAAQSMK NAAEMALSEF QNPNIQLLIK DDAGSAQGAQ
QGAQQALDEG AEVILGPLFA ASVPAVAQAA RTRGTSVIAF STDSSVAGRG VYLLSFLPES
DVNRIVEYAV STGKRSFAAM VPENAYGNVV EAAFKQTVGR RGGRIVAFEK YGADRAGAAR
KVAQSLRSAD ALLIADDGDA VVSVADALTA AGANLRNVQL LGTGLWDNPR VFASAALQGG
LYAAPDPSGF RSFAGRYRAK YGGEPVRTAT LAYDAVALVA ALARTQGAQR FAAETLTNPS
GFAGIDGLFR FRSDGTNQRG LAVMRVASGG GEPIAGSPKS FGA
|
|---|
| |