| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_5446 |
|---|
| Symbol | |
|---|
| ID | 9249349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014211 |
|---|
| Strand | - |
|---|
| Start bp | 633215 |
|---|
| End bp | 634027 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | helix-turn-helix domain protein |
|---|
| Protein accession | YP_003683331 |
|---|
| Protein GI | 297564358 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.284222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAACG AGGTCGATCC GAAGGCTCAG AGGTTCGGTG CCGAGGTACG TCGGATCCGC
GAGCAGGCAG GGTTTTCACA GACCAGACTG GCAAGCCTGA TCCCGGCATC CCAGGCGACG
GTCAGTGATA TCGAACTGGG CAAGACGCCC ACCAAAAAGG TCACCGCACA ACGAATCGGT
CAGGCGCTCA ACAGCGAGGA ACGGCTAGTC TCCGTGTGGG AGGACCAGTA CGAGGGGTAC
AAGCCTCCGG ACTGGTACAA GGAGCTGCCA CTCGTGGAGC AGCGGGCCAC GCAGATCCAG
CAGTACCACC CGTTGCTCGT CCCAGGTCTT CTTCAAACCC GTGATTACAT GCGAGCCACG
ATCAGGGCCC CCAAGAAGAC AGCACAGCAA GAAGCCATAG ACGCGAAGGT TGAAGAAAGG
AGCGAGCGCC AAAATTTCCT GAAGCGCGAA AACCCACCCT TCTACTCGGT CGTCTTGGAT
GAAACCGTGC TGCATCGACG CATTGGAAGC CCTGACACGA TGCGAGGTCA GCTCGAATAC
CTGCTGGAGG CCTCGGCCCA GAGCCGCATG GAAATTCTGG TCATCCCCGC AGACACCTGG
GACCACCCGG GTTTGGACAA CGGGGTAATA TTGCTGAAAG TTCCGAATTC CGGAACGCTC
CTCTACCTGG AGACAGGACC CATCGGAGGA GTGATATCTG ATACCAGAAT GGTCGATGAG
TACATCTCTC TGATGAGTGA CCTGCGGGGA CTGGCTCTGC CTCCCAATCA GACACGGTCG
TTGATCAAGA AAGTGCTAGG AGAAATCGAG TGA
|
|---|
| Protein sequence | MANEVDPKAQ RFGAEVRRIR EQAGFSQTRL ASLIPASQAT VSDIELGKTP TKKVTAQRIG
QALNSEERLV SVWEDQYEGY KPPDWYKELP LVEQRATQIQ QYHPLLVPGL LQTRDYMRAT
IRAPKKTAQQ EAIDAKVEER SERQNFLKRE NPPFYSVVLD ETVLHRRIGS PDTMRGQLEY
LLEASAQSRM EILVIPADTW DHPGLDNGVI LLKVPNSGTL LYLETGPIGG VISDTRMVDE
YISLMSDLRG LALPPNQTRS LIKKVLGEIE
|
|---|
| |