| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_1793 |
|---|
| Symbol | |
|---|
| ID | 9245643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | + |
|---|
| Start bp | 2192619 |
|---|
| End bp | 2193995 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/ D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_003679727 |
|---|
| Protein GI | 297560753 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.14509 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.597018 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGCCCT TGTCCCTCGC CCAGATCGCT ACCGCCACCG GCGGCCGGGT CACCGACGCC
GATCCCGCGA CCCAGGTGAC CGGGGTCGCC TTCGACTCCC GCGAGGCGAT CCCCGGTGAC
CTGTTCGTCG CACTGCCCGG ACAGGGCCGC GACGGACACG ACTTCGCCCC GTCCGCCGTC
GAGGCCGGGG CGGTCGCGGT GCTCGCCGCC CGCCCGCTCG GCCTGCCCGC CGTGGTGGTC
GAGGACCCCC TCGCCGCGCT GGGCGCCTGG GCCCGCGCCC ACGTCGAGGC GCTGGCGGAC
CTGGACGTGA TCGCGGTGAC CGGTTCCTCC GGCAAGACCT CCACCAAGGA CCTCATCGCC
CAGGTCCTCG ACCGCGCCGG AGCCACCGTC TTCACGCAGG GGTCGTTCAA CAACGAGATC
GGCCTCCCGC TCACCGCCCT GGAGGCCACC GCCGACACTC GCCACCTGGT GGTGGAGATG
GGCGCACGCG GGCAGGGGCA CATCGCCTAC CTCACCGGTA TCACCCCGCC CCGGATCGGG
GCGGTGCTCA ACGTCGGCAC CGCGCACGCC GGGGAGTTCG GCGGCCCGGA CATGACCGCG
AGGGCCAAGG GCGAACTGGT CGAGGCGCTG CCCGCCGCGG CCGAGGGCGG CGTGGCCGTG
CTCAACGCCG ACGATCCGCG GGTGGCCGCG ATGTCCGCGC GCACGAAGGC CGAGGTGGTC
ACCTTCGGGG TGGAGCGCGC CGCGGACGTG TACGCCACCG GCGTCGCCCT CGACGGGCGG
GGCAGGGCCT CGTTCACCCT GCACACCCCG GCCGGGCAGG CCCCGGTCCG CCTTCAGGTG
GTGGGGGAGC ACCAGGTGCC CAACGCGCTC GCCGCCGCCG CGGTGGCCGG GGCGGCGGGG
ATGGACGTCG AACAGATCGG CGGGGCCCTC ACCGCGGCGG TGCCGGTGTC GGAGGGGCGG
ATGCGCGTCA CCGAACGCCC CGACGGGGTG ACGGTGGTCG ACGACGCCTA CAACGCCAAC
ACCGACTCCA CGAGCGCGGC GCTGCGCGCG CTGGCGCACC TGGGCCGTGA GAGCGGCGGA
CGCACGATCG CCCTGCTGGG GGAGATGCGC GAACTCGGGG ACGGCTCGGA GCGGGAGCAC
CGCAGGGTCG GCGCGCTCGC CGCGTCGCTG GGCGTCGACG TGCTGGTCGC GGTGGGCCGG
GCGGAGGCGC ACGCGCTCGC GGACGAGTAC GGGCCCGGCG GTCAGGTGGT CGCGGACAGG
GACGCGGCCG GGGAGTGGCT GGAACGGTAC GGCCTCCGGG CCGGGGACGT GGTGCTCGTC
AAGGGCGCCA ACGCCCTGAA ACTGGGGGAA CTCGCGGACG CGCTCGCGGC CCGGTAG
|
|---|
| Protein sequence | MQPLSLAQIA TATGGRVTDA DPATQVTGVA FDSREAIPGD LFVALPGQGR DGHDFAPSAV
EAGAVAVLAA RPLGLPAVVV EDPLAALGAW ARAHVEALAD LDVIAVTGSS GKTSTKDLIA
QVLDRAGATV FTQGSFNNEI GLPLTALEAT ADTRHLVVEM GARGQGHIAY LTGITPPRIG
AVLNVGTAHA GEFGGPDMTA RAKGELVEAL PAAAEGGVAV LNADDPRVAA MSARTKAEVV
TFGVERAADV YATGVALDGR GRASFTLHTP AGQAPVRLQV VGEHQVPNAL AAAAVAGAAG
MDVEQIGGAL TAAVPVSEGR MRVTERPDGV TVVDDAYNAN TDSTSAALRA LAHLGRESGG
RTIALLGEMR ELGDGSEREH RRVGALAASL GVDVLVAVGR AEAHALADEY GPGGQVVADR
DAAGEWLERY GLRAGDVVLV KGANALKLGE LADALAAR
|
|---|
| |