| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_4457 |
|---|
| Symbol | |
|---|
| ID | 8450084 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | - |
|---|
| Start bp | 4946023 |
|---|
| End bp | 4950720 |
|---|
| Gene Length | 4698 bp |
|---|
| Protein Length | 1565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 645043504 |
|---|
| Product | PKD domain containing protein |
|---|
| Protein accession | YP_003203732 |
|---|
| Protein GI | 258654576 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3291] FOG: PKD repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAGC GGCTGACGGC GCTGGCGGCC ACGGCAGCAA TGGTTGCCGG AGGATTGGTC
GGAACCGTCG TGCTCGCGCC GTCGGCCGCG GCCGACACGC CGAACGTCGT GAATCCGACC
TCGTCGACCG TGAGTGCGGA CGCGTTGCCG ACGGTCCAGA TCGACGGTGT GGCCTGGGAT
CAGACTGTCG TCGGCAACAC CGTGTACGTC GCGGGCCAAT TCACCAATGC CCGGCCGGCC
GGTGCGGCTC CCGGTACCAA CCAGACCAGC CGTAACAACC TGCTGGCCTA CGACGTGACT
ACGGGCAACC TGGTCACCTC GTTCAATCCG TCGCTGAACG CCCAGGCCAA GACGGTCGCG
GTGTCGCCCG ATGGCAAGCG GCTCTACGTC GGCGGCACCT TCACTCAGGT CGGCGGCGTC
AACCGGTACC GGATTGCCGC ATTCGACACG GCGACCGGCC AGCTGATCAG CAACTTCAGC
CCGGCGATCG ACGCCACCGT CAACTCGATC GTCGCGACGA ACACGACCGT GTATGTGGCC
GGGACCTTCT CCAAGGTTGG CGCGACCGCA CGACCCAGAC TTGCGGCGTT CAATGCCAGC
AACGGTGCGC TGCTGTCCTG GGCGCCCACG GCCGACGCCA CCGCCCGAGC TTTGGTGCTG
TCCCCGGACG GGCAGTCGAT CATCGTGGGT GGCTCGTTCG CGAACGTGAA CGGATCACCG
GCCTACGGGT TGGCGAAGAT AGACGCGACG ACGGGTGCGT TGATCCCGTG GGCCACCAAC
ACCGTGGTCC GCAACGCCGG GGCGAACGCG GGCATTTACA GCCTGACCAC CGATGGGACC
TCGATCTACG GCACCGGATA TGCCTTCGGG CCCGGCGGCA ACCTGGAAGG CACTTTCAAG
GCCGACCCCG CCAGCGGCGC CGTTCAGTGG ATCGAGGACT GTCACGGCGA CACCTATGAC
GCCTGGGTGG GCAACGGCAA TGTCTACACG GTGAGCCATG CCCACTATTG CGGCAACATC
GGCGGCTTCC CGCAGTCCGA CCCGTGGTCG GTCAACATGC GCCATGCGCT GGCCTTCACC
ACGAGCGCGA ACACCACGAT CGGGCACGAT CCGTTGGGTT ACTACGACTG GTACGGAAAC
CCGGCCCCGG CCATGATCAA CTGGTTCCCC GATCTGGCGG TCGGCTCCTT CACTGGCCAG
ACCCAGGCTG CATGGACGGT GGCCGGCAAC GGGAGCTACG TCGTTCTGGG GGGCGAGTTC
CCGTCGGTCA ACGGTACGGC CCAGCAGGGC CTGGTTCGGT TCGCGGTCCG CAGCATCGCC
TCGAACAAGT CCGGTCCGCA GTACGCGGCA TCGCAGATCA ATCCGACCGT GGTCGCCGTC
GCCGGTGCTG CCCGGGTCTC CTGGCAGGCG AACACCGACC GGGACGACAA GTCCCTGACG
TACACCTTGA CCCGCGACGG CCAGACCGTT TTCACCACTA CGGCGGACAG CACCTTCTGG
GATCGACCCG GGATGGGTTA TCTGGACAAG GGGCTTACCC CCGGGCAGAG CTACAAGTAC
CGGCTCAAGG TCAGTGATCC CAACGGCAAC ACGGTCCAGA GTGAGAACGT GACGTTCACG
GCGACCGCCG GTGCCGGGCC GACCGCCTAC ACCCAGCGAG TACTTGCAGA CGGCGCGAGC
ACGTACTGGC CGCTCAATGA GGCCGACGGA ACGACGATCT ACGACAACGC CGGCTTCACG
GATGCCGCGG CCAGCGGCAC CCTGACCCGG GGGGTGGCCG GAGCCGTCGC CGGCGACACG
TCGACGACCT TCGGCAACGC AGTGACCGCG TCCACCGCGA ATGCCGTGAA CGCACCGAAC
ACCTTTACCG CGCAGGCCTG GATCAAGACG ACCACCACCA GCGGCGGGAA GATCCTGGGC
TTCGGCAACA AGCAGACCGG CGGCTCGACC AGCTACGACC GGCACATCTA TATGGACAAC
GCCGGGCGCA TCTTCTTCGG TGTCTACCCG GGTTCCGTGG CCATCGTCAA CAGCGACGCC
GGCTACAACG ACGGACAGTG GCATCAGGTC ACTGCGTCGC TCGGTGCCGG TGGGATGAAA
CTGTTCATCG ACGGCCGCCT GGTCGGTAGC CGGACCGATG TCACGACGGG CCAGCCGTTC
AGTGGTTACT GGCGGTTGGG TGGCGACAAC ATTGGCGGCT GGCCCAACCA GCCTGCGAGC
TCGAGCTTCA ACGGCACCAT CGACGAGGTC GCTCTCTACC CGACGGAGCT GACCCGAGCG
GTCATCGACG CCCAGTGGGT GGCGAGCGGG CGGACGTCGA CCTTCCCGGC GGCGCCGGCG
GATCCCTATG GCGCGGCGGT CTACAACGAC GGTGCGCAGC TGTATTGGCG GCTGGGGGAG
TCGACCGGCA CCACCGCGGC GGATTCGAGC AGCAACGGCG ACCAAACCGG CTCCTACCAG
GGTGGATTCA CCCGCGGGGT GGCCGGTGCA CTGGCCGGGG TCGCCAACAC GGCCACGACC
TACAACGGCT CCGATGGGGC CACGGTCGGG ACCAGGAGCT TTGTCAATCC GACGAATTAC
AGCGAGGAGG CGTGGTTCAA GACCACGACC ACCAGTGGGG GCAAGATCAT CGGGTTCGGG
AGCAGCAACA GCGGCCGATC CAGCAACTAC GACCGCCACG TGTACATGGA GGCCGACGGT
CGCTTGACTT TCGGCACCTG GACGGGGGTG GCCAACACCA TCAGCACGAC CAAGACGCTG
AACGATGGCA AGTGGCACCA GGTGGTGGCG ACCCAGTCCA GCACCGACGG GATGAAGCTG
TACGTCGATG GCCAGCTGAT CGGCACCAAC CCGCAGACCG CGGCGCAGGC CTACACGGGA
TACTGGCGAG TGGGTGGGGA CAGTAGCTGG AACTCGGGGA GCGGCTTCTT CGCGGGCTCC
ATCGACGAAG CGTCGGTGTA CGGGACCGTC CTGACCGCCG GCCAGGTGAG TACACACTTC
AACCGCGGAA CCGGTGTCGT CACCAACCAA CCGCCGACCG CCGCGTTCAC CTCGACAACC
AGCGGGTTGA CCGCGAACGT GGATGCGTCG GGTTCGACGG ATTCTGACGG GACGATCGCG
TCCTACGCGT GGGACTTCGG CGACGGCGCG ACCGGAACCG GGGCGACCGC CAGTCATGCC
TACGCCACCG GTGGAACCAA GACGGTCACC CTGACCGTCA CGGACAACAA GGGTGCAACT
GCGCAGGTCA GCCACACGCT GTCGGTGACG TCGCCAAATC AGGCCCCCGT GGCGTCGTTC
ACCGCGACGG CCGTCCATCT TGCGGTGACC GTAGACGCCT CGGGATCGTC GGATCCGGAC
GGAACCGTCG CGTCCTACGC CTGGGACTTC GGTGACGGGG CCACGGCAAC CGGTCCGACC
GGCTCGCACA CCTATGCGAC CGCGGGGACC AAGACGGTCA CGCTGACGGT GACCGACGAC
AAGGGCGTGA GCTCGACGTT GTCGCAGCCC GTCCAGGTGA CCGCGCCGCC GCCCAACGTG
CGACCGACGG CCGGCTTCAC GTCGACCACT GACGGCCTGA CCGCTAACCT GTCGTCCACC
TCGACGGATT CGGATGGCAC CGTTGTCGCC TGGTCGTGGG ACTTCGGCGA CTCAACCCCA
GCCATCACGA CCGAAAACGC GACCCATACC TACGCCACGG CCGGGACCCG CCAGGTGACC
CTGACGGTGA CCGACAACAA TGGGGCCACC GCGACGGTCA CCCGCGATGT CACCGTGACC
GCTCCGCCGC CCGCCAATCA GCCGCCGACC GCCGATTTCA CCACCGCGGT CGATGGCCTG
ACCGCCTCGA TCACATCGAT CTCGACGGAT CCCGACGGCA CTGTCGCGGC CTATGCCTGG
AACTTCGGCG ACAACAGCAC CGACATCGTG TCCACGCCCA CCGCCTCGCA CACCTTCGCC
ACCGCGGGCA CTTACCAGGT CACGCTGACG GTCACCGACA ACAGCGGTGC GACGGCCACC
GTGACCAAAC CCGTGACTGT GACTTCTCCT GCTCCCACCT CACTGGCCGC GGACGCTTTT
GGCCGAACGA TCAGCAACGC GTGGGGAACA GCTGACAACG GCGGTGCCTG GACGGTTTCC
GGCGGCGCGG CGAACTTCTC GGTCTCGGGA GGCAGCGGAA AGGTCAAATT GACCGCTCCG
GGAGTAGGCC CATCGGCCAC CCTGGGGGCC CTGTCGAGCG CGGACGTCAA CCTGACCATG
GACGTGTCCT TGGACAAGCC GGCGACCGGG GGTGGGGTTT ATGTGTCCGA ATCCGTCCGT
AGGGTCGGCA ACTCCGAGTA CCGCACGACC TCGAAGTTCC TCGCTTCCGG AGCGGTTCAG
CTTCAACTGG TCAAGGTGGT CGGTGGAGTT TCCACCAACC TGCAGACGGT GACCGTTCCG
GGTCTCACCT ACGCGGCCGG TGATGTGGTG ACAGTCCGGT TCCAGGTCAC CGGGACATCG
ACGGTGAGCC TGAAGGGCAA GCTGTGGAAG GCCGGCACGA CCGAGCCGGC CGCATGGCAG
GTGTCCGCGA CCGACGCCAC CAGCCCGCTG GTCGCGGCCG GAGGAGTAGC CCTCTACCCC
TACCTGTCCG GCACGGCAAC GAACGCCCCG GTCGTCGTCG GTTTCGACAA CCTGATGGTG
AGCGCCGTCC AGCAGTAG
|
|---|
| Protein sequence | MSKRLTALAA TAAMVAGGLV GTVVLAPSAA ADTPNVVNPT SSTVSADALP TVQIDGVAWD
QTVVGNTVYV AGQFTNARPA GAAPGTNQTS RNNLLAYDVT TGNLVTSFNP SLNAQAKTVA
VSPDGKRLYV GGTFTQVGGV NRYRIAAFDT ATGQLISNFS PAIDATVNSI VATNTTVYVA
GTFSKVGATA RPRLAAFNAS NGALLSWAPT ADATARALVL SPDGQSIIVG GSFANVNGSP
AYGLAKIDAT TGALIPWATN TVVRNAGANA GIYSLTTDGT SIYGTGYAFG PGGNLEGTFK
ADPASGAVQW IEDCHGDTYD AWVGNGNVYT VSHAHYCGNI GGFPQSDPWS VNMRHALAFT
TSANTTIGHD PLGYYDWYGN PAPAMINWFP DLAVGSFTGQ TQAAWTVAGN GSYVVLGGEF
PSVNGTAQQG LVRFAVRSIA SNKSGPQYAA SQINPTVVAV AGAARVSWQA NTDRDDKSLT
YTLTRDGQTV FTTTADSTFW DRPGMGYLDK GLTPGQSYKY RLKVSDPNGN TVQSENVTFT
ATAGAGPTAY TQRVLADGAS TYWPLNEADG TTIYDNAGFT DAAASGTLTR GVAGAVAGDT
STTFGNAVTA STANAVNAPN TFTAQAWIKT TTTSGGKILG FGNKQTGGST SYDRHIYMDN
AGRIFFGVYP GSVAIVNSDA GYNDGQWHQV TASLGAGGMK LFIDGRLVGS RTDVTTGQPF
SGYWRLGGDN IGGWPNQPAS SSFNGTIDEV ALYPTELTRA VIDAQWVASG RTSTFPAAPA
DPYGAAVYND GAQLYWRLGE STGTTAADSS SNGDQTGSYQ GGFTRGVAGA LAGVANTATT
YNGSDGATVG TRSFVNPTNY SEEAWFKTTT TSGGKIIGFG SSNSGRSSNY DRHVYMEADG
RLTFGTWTGV ANTISTTKTL NDGKWHQVVA TQSSTDGMKL YVDGQLIGTN PQTAAQAYTG
YWRVGGDSSW NSGSGFFAGS IDEASVYGTV LTAGQVSTHF NRGTGVVTNQ PPTAAFTSTT
SGLTANVDAS GSTDSDGTIA SYAWDFGDGA TGTGATASHA YATGGTKTVT LTVTDNKGAT
AQVSHTLSVT SPNQAPVASF TATAVHLAVT VDASGSSDPD GTVASYAWDF GDGATATGPT
GSHTYATAGT KTVTLTVTDD KGVSSTLSQP VQVTAPPPNV RPTAGFTSTT DGLTANLSST
STDSDGTVVA WSWDFGDSTP AITTENATHT YATAGTRQVT LTVTDNNGAT ATVTRDVTVT
APPPANQPPT ADFTTAVDGL TASITSISTD PDGTVAAYAW NFGDNSTDIV STPTASHTFA
TAGTYQVTLT VTDNSGATAT VTKPVTVTSP APTSLAADAF GRTISNAWGT ADNGGAWTVS
GGAANFSVSG GSGKVKLTAP GVGPSATLGA LSSADVNLTM DVSLDKPATG GGVYVSESVR
RVGNSEYRTT SKFLASGAVQ LQLVKVVGGV STNLQTVTVP GLTYAAGDVV TVRFQVTGTS
TVSLKGKLWK AGTTEPAAWQ VSATDATSPL VAAGGVALYP YLSGTATNAP VVVGFDNLMV
SAVQQ
|
|---|
| |