| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_3294 |
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| Symbol | |
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| ID | 8448909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nakamurella multipartita DSM 44233 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013235 |
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| Strand | - |
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| Start bp | 3620161 |
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| End bp | 3621000 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 645042373 |
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| Product | shikimate-5-dehydrogenase |
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| Protein accession | YP_003202613 |
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| Protein GI | 258653457 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase
[TIGR01809] shikimate-5-dehydrogenase, fungal AROM-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.000542793 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0771139 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTTCTG CCCATCGGGC GGCCGTTGTC GGCTCGCCGG TGACCCACTC CCTCTCGCCC
GCCCTGCACC GCGCCGGCTA CGCCGCGGCC GGACTCACCC AGTGGCAGTA CGAACCGATC
GAATGTGACG CGCAGGCGCT GCCGGACCTG GTGCGATCCC GCGGTCCGGA GTGGGCCGGC
TTCTCGGTCA CCATGCCGGG CAAGTCGGCC GCCGCGGCCG TCGCCGACGA GTGCTCACCG
CGGGTGCAGG CGCTCGGCGT GGCCAACACC CTGGTCCGCC GCGACGGCGG CTGGTTCGCC
GACAACACCG ACGTGGACGG CCTGGTCGGG GCGTTGCGCG CGGCCGGCGC GCCGCCGATC
CGCTCCGCGC TGGTCCTGGG CGGCGGGGGA ACGGCGGCCG CGGTGCTGGC CGCGCTGTCC
GAGTTGGGCA CCGCGACCGT GGCCATTGCC GGCCGCCGAC CGTCGTCCAC CGCGGGGGCC
GTCGAGGTCG CCGCCACCCT GGGCATCCCG CTGCGGGTCA TCGGCTGGGA CACCGACGTC
GTCGCCGAGG CGGCCGCCGG GGTCGACCTG GTCGTGTCCA CCGTGCCGGC CGGCGGGGCC
GACCACCTCG CGTCCGCGCT GCGCGCGGTG CCCGTGCTGT TCGATGTCAT CTACCACCCG
TGGCCGACCC CGCTGGCCGC CGGTGGCGTG CCCGGCCGGA TCACCGTCAC CGGTCTGGAC
ATGTTGCTGC ACCAGGCGTT CCGCCAGTTC GAGCTGATCA CCGGGGTGCC CGCGCCGGTG
CATGCGATGC GGGCCGGCCT CAAGGCCGGC TCCGGCACCG ACCTGCCGCT GCCCGTCTGA
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| Protein sequence | MSSAHRAAVV GSPVTHSLSP ALHRAGYAAA GLTQWQYEPI ECDAQALPDL VRSRGPEWAG
FSVTMPGKSA AAAVADECSP RVQALGVANT LVRRDGGWFA DNTDVDGLVG ALRAAGAPPI
RSALVLGGGG TAAAVLAALS ELGTATVAIA GRRPSSTAGA VEVAATLGIP LRVIGWDTDV
VAEAAAGVDL VVSTVPAGGA DHLASALRAV PVLFDVIYHP WPTPLAAGGV PGRITVTGLD
MLLHQAFRQF ELITGVPAPV HAMRAGLKAG SGTDLPLPV
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