| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_2755 |
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| Symbol | |
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| ID | 8448367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nakamurella multipartita DSM 44233 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013235 |
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| Strand | - |
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| Start bp | 3019532 |
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| End bp | 3022975 |
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| Gene Length | 3444 bp |
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| Protein Length | 1147 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 645041847 |
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| Product | Peptidoglycan-binding LysM |
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| Protein accession | YP_003202090 |
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| Protein GI | 258652934 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00369257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0269725 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCACAT CACACCGGCC CGCACCCGTC AGTTCCTGGC GGACCCGCCC ACCGAACCTG
CTGCAGCGGA TCGGACGTTC CGTGATCTCA GCCACGGTCG CGCTGGCGCT GCTATGCGGC
CTGCCGTGGC TCCTGGTGGC CGCCGTCGGC AACCCGCTGC GCCATTGGCC GGACCTGGTC
GCCGGGGACA TCAGCAACCA GGTGATCCTG GCCGCCCTGG CGTGCCTCGC CTGGATCCTG
TGGGCCCAGT TCGCCGTGGC GTTCCTGGTC GAGCTGGCCT CGGCGATCCG CCGAACACCG
ATGCCCGCCC GCATCCCCGC GGTGCTGGCC TCGCAACAGT GGCTCGCCCG AGCCCTGGTC
AACGGTGTCC TGCTGCTCCT GCCGGTGACC GTCAGCTCCG TCGCCCCCGC CGGGCAGGCG
CTCGCGATGA CCGCGGCCCT GCCGTCCACG CCGGCTTCGA GCATCGCACC GGCCGATCGG
GGCGGGCCGA CGACCCCATC GTCGGCGGTC GCCACCGTCG TTGTCGCCGC GGACGGTGCG
CGGACCTGGT GGGACCTCGC CGAACGGCAC CTCGGCGACG GTGCGGCGTG GCGGGACCTC
TGGACGCTCA ACGCCGGACG AACGCAGCCC GACGGAACCA CGCTGACATC CGAACGCATC
ATGCTGCGCC CCGGTTGGAC CGTGCTCGTC CCCGCCGATC CGGGCGCCCC GCTCCCGCCC
CCTCCGGGCG ACGAGACCGA GACGGCCCCG ACTCAGGTGG TGGTCCGACC GGGCGACACG
CTGACCCGGA TCGCCGCCGA GCACGACAGT GGCGACTGGA CCGAACTCTG GCAGGCGAAC
GAGGGACGCA GCCAGCCCGG CGGCGAAGTC TTCACCGACC CCGATCTGAT CGAACCCGGC
TGGGTCATCA CGATCCCGAC GAGCGGCACT GCTGACGGGG TCACCCGGCC GACCGTCACC
GTTCGGTCCG GGGACACCCT CTCGCGGATC GCCGCCGACC ATGGCATCAC CGTCGACAAA
CTGTTGGCTG CCAACATCGG CGTCGCCCAG CCGGACGGGG ATGCCCTCAC CGACCCGGAC
CTGATCCACG TCGGCTGGGA GTTGGCCCTT CCCGATCCCG CAGACGTCCC TCCACCTGCA
CAAACGGAGC CGGCCGGACC GACCGGCGGC GGCGAGGGCC CGTCCGCTGA CACCCATGAG
CCGCCCACTG ACACCTCTCC CCCCACCTCC GGCGCTCCGT CAGCGTCGGC ACCCGCGCCC
GCTGACATCC CTCCGGCTCC GCCGACATCC GACCCCAGCA CCGAGCAGCC AGCTGCAACA
CCGGCCGCGG AACCCGAACG CGGCGAGGTT GACGGCGACT CGGCCACCAC CACCCCACCG
GCCGTTCCGA TCGCGGCGTT CGCCGGAGCC GGCGGGGTGC TCGCGGCACT GGCCCTGGCC
ACCCTGATCG GCTACCGGCG ACGCCAGTTC CGGCATCGGC GACCCGGGCA TGCGCCCTCC
GCGACACCCG ACGACCTGGT CGCGATGGAA CGCGCACTCC TCGCCGCCGG ATCAGCCGCC
GCACCTGACG CGGAATTCCT GCACCACGCG CTGCACGGCA TCGCCCACCT GTCCGCGGCC
GGAGATTCAC CGCCGCCCGA CGTCGCCGCC GCCGTACTGA CCGACCGCGA CCTGACGCTG
CTGCTGCACA CCCCACGAGC CGATGCCGCC GGAGCATGGG TCGGCAGCAA TGACGGCCAC
CGCTGGACCT TGCAGCGAAC CGACCCGACC GGCTACCAGC CGGCGCGCCG CGGATGGCTC
GCCCCGCCCT ACCCCACGCT CGTCACCGTC GGCTCCACAC CGGCCGGTGA GCACTGGCTG
ATCGACCTGG AACGAGCCGG CGCCCTGACC GTGTCGGGCG ACCGGAAAAC GGCGCTTGGG
CTGGCCCGCT CGATGGTCGC CGAACTCGCC CACAATTCGT GGTCCGAGTC GGTGGAGGTG
ACCATGACGG GCTTCGGTCG GGAACTGGCC GCGATGCACC CGGAACGTCT CACCCACCTG
GACAGTGCGG CGACGGCGTT CGCCCGGCTG CGTCGGCACC GCGACGCCAC GGCTGACGCG
ATGCAGGCGA CGGGGACGGA CGTCCTCACC GGGCGAAACA GCGGCGTCGC CGGCGACGCC
TGGAACTCGC AGGTCCTGCT GGTCGCGGCA CCGGACGCCG CCACCGGTGC CGAATCGGTG
GATCTGGGGC GGGAGCCCGC ACGATCGACC GTCGCCGTCG TGACCGTCGG CGAGGCCACC
GGAACTGCCT CCCGCCCCCG ATGGGAGCTG CGCGTCACCG AAGACGGACT GCTGAGCATT
CCCGCACTGG GCGCCACCCT CATCGCACAA CAGATCCCGG AGGCCGAAGC GGATCGGCTC
GCCCGGCTGC TGTCCTTCGC CGCCGATCCC ACCCCGGTCG GCGACCCACA CGAGGACGGC
CGGGTTCACC TGCGCGGCAA CTCTGGCCCG AAGGAGATCG CGCGACCCGG CTCGCTGCTG
GCGGAGCCCG ACTCCACCTA CCTGGCGACG ACGGCGACCA CTACGCGGGA CCTACAGTGC
CTGGCACCGG CGGTGTCATC GCAGCATCGG AAACGCGCCG AAGCCGCCGA CACCAGCCTC
GACGCGGACT TTGCTGCCTG GCACGACCCG GACACCCCAC GGCCCCGCAT CGCCCTGTTC
GGTGGCCCGA CGGTGCGGGT CGGCAACGCG CGATTCTCGG CGTTCAACGT CGAGATCGCG
GCGTACCTGG CCACCCGAAC CGCGGGCGTC GGTATCGACC GCTACGCCAG CGACCTGTGG
CCGACCGAGC CCGACATCGT CAGCCAGACG ACCGTCCGGT CCAAGGTCCG CACCAGTCTG
AGCCAGTTCC GCAAGCTTCT TGGTACGGAC CCGGTCACCG GTGAGGACTA CCTGCCCCGC
AACACCGGTA AGGCGGCCGC CGAGTACCGG CTGAGCCCGG CCGTGCTGGT GGACGTCGAC
CTGTTCGACC GGCTCCGCGT CCGCGGCCAG GTCCGGGGCC CGAACGGCCT GACCGACCTG
CACGCTGCCC TCGAACTGGT CACCGGCCCG CCGCTGGCGG CGCGCCGCCC CGGCGGGTAC
GGGTGGCTGG CCGACACCCC GATCGATCAC CACCTGTCGG CGGCGGTCGT CGACCTGGCC
CACCTGGTCG CAACCCACCA CCTCGCCCAC GGCGAACCGG AGGAGGCCGC GGCCGCCGCG
CAAACCGCGC TGCGGGCCGG ATCGAGCGAG GACACCCCGC TGCTCGACCT GGTGGCGGTG
TGCCATGCCC AGGGTCAGGT CGCCCAGGCC GACGTCTACA TCCGACGGAT CATGGCCAAC
CACGGGGCGG ACGTCGAAGA AGACCTGCCG CCCCGCACCT ACGAGGTCCT GCTGCGCCGT
CAGTGGTTGC CGCCCGCCGC ATGA
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| Protein sequence | MRTSHRPAPV SSWRTRPPNL LQRIGRSVIS ATVALALLCG LPWLLVAAVG NPLRHWPDLV
AGDISNQVIL AALACLAWIL WAQFAVAFLV ELASAIRRTP MPARIPAVLA SQQWLARALV
NGVLLLLPVT VSSVAPAGQA LAMTAALPST PASSIAPADR GGPTTPSSAV ATVVVAADGA
RTWWDLAERH LGDGAAWRDL WTLNAGRTQP DGTTLTSERI MLRPGWTVLV PADPGAPLPP
PPGDETETAP TQVVVRPGDT LTRIAAEHDS GDWTELWQAN EGRSQPGGEV FTDPDLIEPG
WVITIPTSGT ADGVTRPTVT VRSGDTLSRI AADHGITVDK LLAANIGVAQ PDGDALTDPD
LIHVGWELAL PDPADVPPPA QTEPAGPTGG GEGPSADTHE PPTDTSPPTS GAPSASAPAP
ADIPPAPPTS DPSTEQPAAT PAAEPERGEV DGDSATTTPP AVPIAAFAGA GGVLAALALA
TLIGYRRRQF RHRRPGHAPS ATPDDLVAME RALLAAGSAA APDAEFLHHA LHGIAHLSAA
GDSPPPDVAA AVLTDRDLTL LLHTPRADAA GAWVGSNDGH RWTLQRTDPT GYQPARRGWL
APPYPTLVTV GSTPAGEHWL IDLERAGALT VSGDRKTALG LARSMVAELA HNSWSESVEV
TMTGFGRELA AMHPERLTHL DSAATAFARL RRHRDATADA MQATGTDVLT GRNSGVAGDA
WNSQVLLVAA PDAATGAESV DLGREPARST VAVVTVGEAT GTASRPRWEL RVTEDGLLSI
PALGATLIAQ QIPEAEADRL ARLLSFAADP TPVGDPHEDG RVHLRGNSGP KEIARPGSLL
AEPDSTYLAT TATTTRDLQC LAPAVSSQHR KRAEAADTSL DADFAAWHDP DTPRPRIALF
GGPTVRVGNA RFSAFNVEIA AYLATRTAGV GIDRYASDLW PTEPDIVSQT TVRSKVRTSL
SQFRKLLGTD PVTGEDYLPR NTGKAAAEYR LSPAVLVDVD LFDRLRVRGQ VRGPNGLTDL
HAALELVTGP PLAARRPGGY GWLADTPIDH HLSAAVVDLA HLVATHHLAH GEPEEAAAAA
QTALRAGSSE DTPLLDLVAV CHAQGQVAQA DVYIRRIMAN HGADVEEDLP PRTYEVLLRR
QWLPPAA
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