| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_1906 |
|---|
| Symbol | |
|---|
| ID | 8447513 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 2099063 |
|---|
| End bp | 2100883 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 645041036 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_003201284 |
|---|
| Protein GI | 258652128 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3500] Phage protein D |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0194585 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0014616 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCCCA CCTCGTCCAG CTTCCTGGTC GACATCGACG GCTCGCCGCT GGCCGCCGAC
GCCAAGGCAC TGCTGGTCTC GGCGATCGTC GACGACAGCC TGCGGCTGCC CGACTTCTTC
CTGCTCCGCT TCCGTGATCC GGACCGGTTG GTGATCACCA AGTCCGGCGC CAAGATCGGG
TCCAAGGTCA AGGTCAGCGT GGCCACCGAC GCCGCGCCCA GCCCGTTGCC GCTGATCGAG
GGGGAGATCA CCGCGCTGGA GGCCGAGTAC GACGCCACCG GCACCTACAC CGTCATCCGC
GGCTACGACC AGGCCAACCG GCTCTTCCGG GGCCGGCGCA CCGAGTCCTA CACCCAGAGC
ACCGCCTCGG ACGTGGCCAC CAAGGTGGCC CAGCGGGCGG GGCTGTCCAT CGGCGAGGTC
GAGTCGACCA GCACCGTCTA CGAGCACCTG TCCCAGGGCG GGGTCACCGA CTGGGAGTTC
CTGGACGGCC TGGCCCGCGA GATCGGCTAC GAGATCGCCG TCAAGGACGG CAAGTTCGAC
TTCCGCAAGC CGAAGAAGGC CGACACCGCC CCGGCCGGCG GCGGGGGACC GGAGCAGCAG
AACCCGTTGG TGCTGCGGCT GGGTACCGAC CTGCTGCGGT TCCGGTCACT GATCACCGCG
GCCGAGCAGG TCAAGGAGGT GCAGGCCCGC GGCTGGGACC TGGCCCAGAA GAAGGCGTTC
GTGGCCACCG CGCCGGCCGC GACCACCTCG GCCGTGCTGC CCGCCTACAA CCCGGTCGAC
ATCGCCAAGA AGTTCGGCGA TCCGGTCTAC GTGGCCACCG ATGTCGCCTA CCGCAGCCAG
GCCGAGGTGG ACAGCGCGGC CGCGGCCATC GCCGAGCAGA TCGCCGGTGC CTTCGCCGAG
TTCGAGGGTG TCGCCCGGGG CAATCCGAAA CTGCACGCCG GGGCGGCGAT CTCGGTGGAC
AACGTGGGGG CCCCGTTCGA CGGGAAGTAC ACCATCACCT CCTCCCATCA TCGCTACGAC
CCGAACACCG GCTACACCAC GATGTTCTCG GTCACCGGCC GCTCGGAACG CAGCCTCTAC
GGGCTGGCCA ACGGCGGTGG TGGCGGCAAG CTCGGGCAGG GGCCGGTCGT CGCGCAGGTC
AGCGACGCCA AGGACCCGCT GGAACAGGGC CGGGTCAAGC TGACCTTCCC CTGGTTGTCG
GACACCTATG TCAGCGACTG GGCCCGCACC GTGCAGCCGG GGGCCGGCAA GGACCGGGGG
GCGCTGGTGC TGCCCGAGGT CGGCGACGAG GTGCTGGTGC TCTTCGAGCA GGGCGACATC
CGCCGGCCCT ACGTGCTCGG TGGCCTGTTC AACGGAGTGG ACACCGCACC CAAGGGCAAA
CCCGACCTGA TCGACGGCAG CTCCGGAGCG ATCAACCGGC GCTCGTTCGT CTCCCGCCGC
GGTCACCGCA TCGACCTGAT CGACGAGGAC GGCCGGACCG AGGGCATCAC GCTGTCCACC
ACCGGCGACA AGCTGCAGCT CAAGCTGGAC TCGGTCGAGA CCAAGATCAC CGTGCACAGC
GACGGCAAGA TCCTGATCGA GGGCAAGGGC GGCGTGCTGA TCGACTCGGC CAGCAGCAAG
CTCGAACTCA AGGGCGGCGA GGTCTCGATC ACCTCCACCA GCGGGGTCAA GATCGACGGC
GGCAGCGGTG GGGTGGACGT GCAGACCAAC GGCCAACTCT CGCTCAAGGG CAGCACCGCC
AAGCTGGAGG GTCAGGCCAG CGCCGAGGTC AAGGCCAGCG GCGTGCTGAC CGTCCAGGGT
TCCCTGGTCA AGATCAACTG A
|
|---|
| Protein sequence | MAPTSSSFLV DIDGSPLAAD AKALLVSAIV DDSLRLPDFF LLRFRDPDRL VITKSGAKIG
SKVKVSVATD AAPSPLPLIE GEITALEAEY DATGTYTVIR GYDQANRLFR GRRTESYTQS
TASDVATKVA QRAGLSIGEV ESTSTVYEHL SQGGVTDWEF LDGLAREIGY EIAVKDGKFD
FRKPKKADTA PAGGGGPEQQ NPLVLRLGTD LLRFRSLITA AEQVKEVQAR GWDLAQKKAF
VATAPAATTS AVLPAYNPVD IAKKFGDPVY VATDVAYRSQ AEVDSAAAAI AEQIAGAFAE
FEGVARGNPK LHAGAAISVD NVGAPFDGKY TITSSHHRYD PNTGYTTMFS VTGRSERSLY
GLANGGGGGK LGQGPVVAQV SDAKDPLEQG RVKLTFPWLS DTYVSDWART VQPGAGKDRG
ALVLPEVGDE VLVLFEQGDI RRPYVLGGLF NGVDTAPKGK PDLIDGSSGA INRRSFVSRR
GHRIDLIDED GRTEGITLST TGDKLQLKLD SVETKITVHS DGKILIEGKG GVLIDSASSK
LELKGGEVSI TSTSGVKIDG GSGGVDVQTN GQLSLKGSTA KLEGQASAEV KASGVLTVQG
SLVKIN
|
|---|
| |