Gene NSE_0336 details

Gene Information

• Locus tag: NSE_0336
• Symbol: rpe
• ID: 3931793
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Neorickettsia sennetsu str. Miyayama
• Kingdom: Bacteria
• Replicon accession: NC_007798
• Strand: +
• Start bp: 276543
• End bp: 277205
• Gene Length: 663 bp
• Protein Length: 220 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637900492
• Product: ribulose-phosphate 3-epimerase
• Protein accession: YP_506225
• Protein GI: 88608693
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0036] Pentose-5-phosphate-3-epimerase
• TIGRFAM ID: [TIGR01163] ribulose-phosphate 3-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCATCGGA TGATTAAGAT CTCCCCTTCC TTACTGTCAG CTGATTTTTT AAATCTACAT 
TCTGATGTGA AACTGTTAGA AGAGTCAGGG GCCGACTCGA TTCACATTGA TGTGATGGAT 
GGGCACTTTG TGCCGAATTT GACTTTTGGA CCTGTCATAA TAGAGCAAAT AAAGAGAATC 
ACATCAATTC CTATTGAAGT ACACCTAATG ATCCTGAATG CTGAGCAGAC TTTTCAGGAC 
TATATCAATG CAGGAGCGGA CACCATTTTT GTGCACAGTG AAGCATGTTT TCACTTGGAT 
AGGATGGTTA ATGCAATAAA AAGTCAGTCT GTCAAAGTAG GTGTTGCGTT AAACCCAGCT 
ACTTCTGAGG AAGCACTAAG ATATCTATAC AACTCGATAG ATGCGGTTTT GATCATGACT 
GTGAATCCAG GTTTCGCATC TCAGGTTTTT CTTACATCCC AGCTTGCTAA AGTGAGTTTG 
GTGCGACGTC GCATAGTGGA ACTTGGTGTT GATGTAACCC TTGCTGTTGA TGGTGGAATA 
AATGCCGAAA CAGCAAATCT TGTAGTCTCC GCTGGTGCCG GGACCCTTGT TACAGGGTCG 
TATCTCTTTT CTAATAGAAA AAATCTTGGC GCTAAGATTG CATCATTACG CGTGCTTGCA 
TGA 

 

Protein sequence

MHRMIKISPS LLSADFLNLH SDVKLLEESG ADSIHIDVMD GHFVPNLTFG PVIIEQIKRI 
TSIPIEVHLM ILNAEQTFQD YINAGADTIF VHSEACFHLD RMVNAIKSQS VKVGVALNPA 
TSEEALRYLY NSIDAVLIMT VNPGFASQVF LTSQLAKVSL VRRRIVELGV DVTLAVDGGI 
NAETANLVVS AGAGTLVTGS YLFSNRKNLG AKIASLRVLA