| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0042 |
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| Symbol | |
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| ID | 3931946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Neorickettsia sennetsu str. Miyayama |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007798 |
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| Strand | - |
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| Start bp | 32301 |
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| End bp | 34034 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637900198 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_505944 |
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| Protein GI | 88608009 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.195884 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAAGAA GTACGGATGC ACCTATTGAA GAAAAACTCA AAGAGACCAT ACTCCATAAA
ACCTTGCATA AGTGCAAATC CGTATTTTGG ATTCTTTTTT GGTTCAGTTC GGGAATAAAT
GTGCTAGCAC TGTTTTTACC ACTCTACACC TCGCAGGTTC TTGATAGAGT ACTCTCAAGT
GGCAGTACTT CGACGCTAAT GGCACTTACA GTGATAACTT TGTGTGCTTT CGCGTGCTCA
TCGGTTCTTG ATGCTTCACG AGCTATGATC ACCGTAAAAG TTGGTAATTG GTTTGACGAC
ACCCTAACAC CAGGACTGCT GAACAACGCA ATTGCACTTA TATCGGTTAG ACCAGGCACA
TCAAGTGGTG AAACTATGCG AGACATGCAG ATCATTCGCG GATTTCTTAC TGGAAACGGA
GTCTTTGCAT TTTTCGATGC CCCATGGTCA ATATTATATT TGGTCGCAAT ATTCCTAATA
AATTTTACCC TTGGTATCGT TGCTATTGTA GGCATAGTTA CACTCATCGG TATCGCACTA
TTAAACGATT TTGCAACCAG AAATCTTGCG CGTCAGAGCA ATGAAGCAAA TGTGCGTAAT
TTGAATGAAA TAGAGATAGC AACACGAAAC TCCGAAGTAG TAGAGGCTAT GGGTATGATC
GAACCTATAG TCGAAAAATG GAGTAAAAAA AATGCCCTAG TCAGAGATAC ACAGACACTT
GCTTTGAGTC GTTCATACAT AATCATGGCA TTCACAAAGG CGGTACGCTT TACGTTGCAA
ATCGCTGTGA TCGGAATCGG AGCTTACCTT GCTATTTCTG GACACAAGAC AGCAGGAGGG
ATAATTGCCG TATCAATTCT AATGGGGAGG GCATTAGCAC CGTTTGAAAT CGCGATTTCA
AACTGGAAGA ATTTATCGCA GGCAAAAACC TCGTATGGTA GGCTACAGAA TATGCTTATC
ACTTCCCCTG TAAGGTCTCA AGCCATGAAG CTTCCGGAAC CCAGCGGGGA AATAGAATTT
GACAGAGTAA TATACACTCC ATTAGGTGGT TCTAAGCCAA CAATTAAAGG AGTTTCTTTT
ACCATCCCAG CTGGTAAAGT AGTGGGAGTC GTAGGCAGCA GTGCAGCTGG AAAGTCCACT
ATAGCAAGAT TGACCGTTGG AGTTCTTAAA CCAATAGCTG GGGTAGTGCG ACTCGATGGT
GCTGATACAT ACACCTGGGA ACGTAAGCAC TTTGGTAAGC ATGTGGGATA CCTACCTCAG
GATATAGAAT TATTCAACGC AACGGTTAAG GAGAACATAT CAAGATTTAA CCCAGACATT
GACCCAGCAG AAGTCGTGAG GGCAGCGAAA ATTGCCGGTG TCCATGAAAT GATATTACAC
CTCCCAAATG GGTACGACAC CGTTATAGGC GCCGGTGGCT CAGTTTTGTC AGGAGGACAA
CGTCAGCGTA TAGGAATAGC AAGAGCTTTT TATGGAAATA TAAAACTTCT TGTACTAGAT
GAACCTAATG CAAATCTTGA TTCAAGTGGA GAGGCACACC TAGCCAAAGC TCTACGCTAC
GCAAGAGAAG CAAGGATCAC CACACTTCTT ATGACCCATA ATTTCTCTCT ACTAAGCGAA
GTTGACTGGC TTATGCTTGT AAAAGAAGGA ACAATCGCGT TCCTTGGAGA GAAAGACGAA
ATCATCAAAC AACTCTCCAT AGGAACCAAA GAACAGAGCA GCGAATCCAA TTAG
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| Protein sequence | MIRSTDAPIE EKLKETILHK TLHKCKSVFW ILFWFSSGIN VLALFLPLYT SQVLDRVLSS
GSTSTLMALT VITLCAFACS SVLDASRAMI TVKVGNWFDD TLTPGLLNNA IALISVRPGT
SSGETMRDMQ IIRGFLTGNG VFAFFDAPWS ILYLVAIFLI NFTLGIVAIV GIVTLIGIAL
LNDFATRNLA RQSNEANVRN LNEIEIATRN SEVVEAMGMI EPIVEKWSKK NALVRDTQTL
ALSRSYIIMA FTKAVRFTLQ IAVIGIGAYL AISGHKTAGG IIAVSILMGR ALAPFEIAIS
NWKNLSQAKT SYGRLQNMLI TSPVRSQAMK LPEPSGEIEF DRVIYTPLGG SKPTIKGVSF
TIPAGKVVGV VGSSAAGKST IARLTVGVLK PIAGVVRLDG ADTYTWERKH FGKHVGYLPQ
DIELFNATVK ENISRFNPDI DPAEVVRAAK IAGVHEMILH LPNGYDTVIG AGGSVLSGGQ
RQRIGIARAF YGNIKLLVLD EPNANLDSSG EAHLAKALRY AREARITTLL MTHNFSLLSE
VDWLMLVKEG TIAFLGEKDE IIKQLSIGTK EQSSESN
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