Gene NATL1_18861 details

Gene Information

• Locus tag: NATL1_18861
• Symbol: rpoB
• ID: 4780040
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. NATL1A
• Kingdom: Bacteria
• Replicon accession: NC_008819
• Strand: -
• Start bp: 1546401
• End bp: 1549688
• Gene Length: 3288 bp
• Protein Length: 1095 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 640085175
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_001015706
• Protein GI: 124026591
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.816976
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 26
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGCAGAA GCGCGATTCA GGTAGCCAAA GCAGCTACAT ATCTGCCTGA TCTGGTTGAG 
GTGCAAAGAT CAAGTTTTAA GTGGTTTTTG GATAAAGGCT TAATAGAAGA ATTAGACAAT 
TTTTCTCCCA TTACTGACTA TACAGGTAAG CTTGAGCTGC ATTTTATTGG AGCAGAATAT 
AAGCTTAAGC GTCCTAGGCA TGATGTAGAA GAAGCAAAAA GAAGAGATGC AACGTTTGCT 
TCTCAAATGT ATGTCACTTG TCGCTTAGTT AATAAAGAAA CCGGAGAGAT TAAAGAACAA 
GAAGTTTTTA TAGGTGAACT ACCTTTAATG ACTGAACGTG GAACTTTTAT AATTAATGGT 
GCTGAGAGAG TAATAGTCAA TCAAATCGTT CGAAGTCCAG GAGTTTATTT CAAAGATGAG 
CAAGATAAAA ATGGTAGGAG AACTTACAAT GCAAGCGTTA TTCCTAATCG CGGAGCATGG 
TTAAAGTTTG AAACTGATAA AAACGATTTG CTGCATGTTC GTGTAGATAA AACAAGAAAA 
ATTAATGCCC ATGTCTTAAT GAGGGCAATG GGTTTATCAG ATAATGACGT TATAGATAAA 
TTACGACATC CTGAGTTTTA TAAAAAGTCA ATTGATGCGG CAAATGAAGA AGGTATAAGT 
TCAGAAGACC AAGCATTGTT AGAGCTTTAT AAAAAGTTAA GACCAGGTGA ACCTCCATCA 
GTAAGTGGTG GCCAACAGCT ACTCCAAACA AGATTTTTTG ATCCAAAACG ATATGATTTA 
GGAAGGGTTG GTAGATATAA AATAAATAAG AAATTACGCT TAACTATTCC TGATAATTTA 
AGAACACTAA CCAACGAAGA TGTTCTTTCT ACCTTAGATT ATTTAATCAA TTTAGAATTA 
GATGTTGGTG GAGCTACTTT GGATGATATT GATCATTTAG GTAATAGAAG AGTTAGGTCA 
GTCGGTGAAC TTCTACAAAA TCAAGTTCGA GTTGGTTTAA ATAGACTTGA AAGGATAATT 
AAAGAGAGGA TGACCGTTGG TGAGACAGAT TCACTTACTC CTGCGCAATT GGTAAATCCA 
AAACCTTTAG TAGCAGCAAT AAAAGAATTT TTTGGTTCAA GTCAATTAAG TCAATTCATG 
GATCAAACCA ATCCATTAGC TGAATTAACT CATAAAAGAC GTATCTCTGC TTTGGGACCA 
GGAGGTTTAA CTCGTGAAAG AGCTGGCTTT GCCGTTCGGG ATATTCATCC ATCTCACTAC 
GGAAGACTTT GTCCGATTGA AACACCTGAA GGACCAAATG CAGGTCTGAT TAATTCGTTA 
GCAACTCACG CACGAGTAAA TGAATACGGT TTTATTGAGA CACCATTTTG GAAAGTTGAA 
AATGGTCGAT TAATTAAGGA AGGTGATCCT ATTTATCTTT CTGCAGATCT AGAAGATGAA 
TGTAGGGTTG CGCCAGGTGA TGTGGCTACA AACGAAGAGG GGAAAATAAT GGCAGAACTT 
GTTCCAGTTA GGTATCGACA AGATTTTGAA ACGGTTTCTC CCGAACAAGT TGATTATGTC 
CAACTATCAC CTGTTCAGGT TATTTCTGTA GCTGCATCAT TAATTCCATT TCTGGAACAC 
GATGATGCTA ACAGGGCTTT GATGGGTTCC AACATGCAAA GACAAGCAGT TCCTCTTTTG 
CGTCCAGAAA GGCCTTTAGT TGGGACTGGT TTAGAGACTC AAGTTGCTAG AGACTCTGGC 
ATGGTTCCAA TTTCAAAAGT AAATGGAACA GTGAGTTATG TTGACGCCAA TGCAATTGTC 
GTTACTGATG ATGAGGGAAA TGATCACACG CATTACTTGC AAAAATATCA GAGATCTAAT 
CAAGATACTT GTTTAAACCA TAGGCCTATA GTTTTTAATG GTGACCCAGT AATTGTGGGG 
CAAGTTTTAG CTGATGGTTC GGCATGTGAA GGAGGGGAAA TAGCTCTTGG TCAAAATGTA 
TTAATTGCAT ACATGCCATG GGAAGGGTAC AACTATGAAG ATGCAATTCT TGTTAGTGAA 
AGGTTAGTTA AAGATGATCT ATATACCTCT GTCCATATAG AAAAATATGA AATAGAAGCT 
CGTCAAACCA AGCTAGGTCC AGAAGAAATA ACAAGAGAAA TTCCAAATGT TTCAGAAGAA 
AACCTTGGGA ATTTGGATGA AATGGGAATA ATACGAATAG GGGCTTACGT TGAGAGTGGT 
GACATACTTG TTGGAAAAGT AACCCCTAAA GGAGAATCAG ATCAGCCTCC TGAGGAAAAA 
CTTTTAAGAG CTATTTTTGG AGAAAAAGCT AGAGATGTAA GAGATAACTC TCTCCGAGTT 
CCCTCAACTG AAAGAGGAAG AGTAGTTGAT GTAAGGATCT ATACAAGAGA GCAAGGTGAT 
GAGTTACCAC CTGGCGCAAA TATGGTTGTA AGAGTCTATG TAGCGCAACG CAGGAAAATA 
CAAGTTGGCG ATAAAATGGC AGGAAGGCAT GGCAATAAAG GGATTATAAG CAGAATACTG 
CCAAGAGAGG ATATGCCTTA TCTTCCTGAT GGCACACCTG TAGACATATG CCTCAATCCA 
CTTGGGGTCC CAAGCAGAAT GAATGTAGGG CAAGTCTTTG AGCTTCTTAT GGGTTGGGCT 
GCCTCAAACT TGGATTGCAG AGTTAAAATT GTCCCATTTG ATGAGATGTA TGGACCAGAA 
ATGTCTAATC AGACTGTACA AGCCTATTTA AAAGAGGCTG CAAAGCAGCC AGGTAAATCA 
TGGGTATACA ACCCTAAGGA CCCTGGGAAG TTACTCCTTA AGGATGGCCG AACCGGTGAA 
CCTTTTGATC AACCAGTTGC CGTTGGCTAC GCTCACTTCC TAAAACTTGT GCACCTAGTC 
GATGATAAAA TTCATGCTCG ATCAACAGGT CCATATTCTT TAGTTACTCA ACAGCCTCTA 
GGTGGAAAGG CTCAACAAGG AGGCCAGAGA CTTGGGGAAA TGGAGGTATG GGCACTTGAG 
GCTTATGGGG CAGCATACAC TTTACAAGAA CTTTTAACTG TAAAGTCTGA CGATATGCAA 
GGTCGGAATG AGGCTCTTAA TTCTATTGTT AAAGGCAAGC CAATTCCAAG GCCTGGGACT 
CCAGAATCTT TCAAGGTTTT AATGAGAGAA CTTCAGTCAT TGGGATTAGA TATTGGAGTT 
TATACAGATG ATGGAAAAGA AGTTGATCTA ATGCAAGATG TAAATCCTCG TAGAAGCACG 
CCAAGTAGAC CTACCTATGA ATCATTAGGT AAAGAATACG AGGAGTAA 

 

Protein sequence

MSRSAIQVAK AATYLPDLVE VQRSSFKWFL DKGLIEELDN FSPITDYTGK LELHFIGAEY 
KLKRPRHDVE EAKRRDATFA SQMYVTCRLV NKETGEIKEQ EVFIGELPLM TERGTFIING 
AERVIVNQIV RSPGVYFKDE QDKNGRRTYN ASVIPNRGAW LKFETDKNDL LHVRVDKTRK 
INAHVLMRAM GLSDNDVIDK LRHPEFYKKS IDAANEEGIS SEDQALLELY KKLRPGEPPS 
VSGGQQLLQT RFFDPKRYDL GRVGRYKINK KLRLTIPDNL RTLTNEDVLS TLDYLINLEL 
DVGGATLDDI DHLGNRRVRS VGELLQNQVR VGLNRLERII KERMTVGETD SLTPAQLVNP 
KPLVAAIKEF FGSSQLSQFM DQTNPLAELT HKRRISALGP GGLTRERAGF AVRDIHPSHY 
GRLCPIETPE GPNAGLINSL ATHARVNEYG FIETPFWKVE NGRLIKEGDP IYLSADLEDE 
CRVAPGDVAT NEEGKIMAEL VPVRYRQDFE TVSPEQVDYV QLSPVQVISV AASLIPFLEH 
DDANRALMGS NMQRQAVPLL RPERPLVGTG LETQVARDSG MVPISKVNGT VSYVDANAIV 
VTDDEGNDHT HYLQKYQRSN QDTCLNHRPI VFNGDPVIVG QVLADGSACE GGEIALGQNV 
LIAYMPWEGY NYEDAILVSE RLVKDDLYTS VHIEKYEIEA RQTKLGPEEI TREIPNVSEE 
NLGNLDEMGI IRIGAYVESG DILVGKVTPK GESDQPPEEK LLRAIFGEKA RDVRDNSLRV 
PSTERGRVVD VRIYTREQGD ELPPGANMVV RVYVAQRRKI QVGDKMAGRH GNKGIISRIL 
PREDMPYLPD GTPVDICLNP LGVPSRMNVG QVFELLMGWA ASNLDCRVKI VPFDEMYGPE 
MSNQTVQAYL KEAAKQPGKS WVYNPKDPGK LLLKDGRTGE PFDQPVAVGY AHFLKLVHLV 
DDKIHARSTG PYSLVTQQPL GGKAQQGGQR LGEMEVWALE AYGAAYTLQE LLTVKSDDMQ 
GRNEALNSIV KGKPIPRPGT PESFKVLMRE LQSLGLDIGV YTDDGKEVDL MQDVNPRRST 
PSRPTYESLG KEYEE