| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_3516 |
|---|
| Symbol | |
|---|
| ID | 7092373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | - |
|---|
| Start bp | 3861228 |
|---|
| End bp | 3862220 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643466807 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_002363767 |
|---|
| Protein GI | 217979620 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.000673643 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCTC TCCAAACGTC GAACCCGGCG GCGAGCCGGG ACCAGCGGCG CCCGCTGCGG
CTGTCCACGA ATGACATCGC GCCCGCTGAG CGATCTGGCT GGCTGCGCGA TGTGATTTGC
CGCGAATACG CGAATGTCGA AGTGACGTCG CCGACCTGCC AGATTCTGTC ACAGGATCTG
ACAATCTACC CTTGGGACCG TTCTCGACTG TCCGTTATCC GGTCATCCGC CGTCGGCCTG
AGGCGCCTGC CGCGCGAGCC GCTGCTCGCC GGTCAGGACG CCTATTTCGT GGTCGTGCTG
CTTTCAGGTG ATTACGTGCT TGAGCAAGAG GGCAAGGAGG TTGTCCTGCA GCCCGGCGAT
ATGACGATCT ATGACGCGAC TCGGCCGCAC AAAATCCATT GCCCACGGGA CTTTTCGAAG
CTCATTCTAG CGATCCCCCG TTTGCTGCTG CGAGAGCGGA TGGCGGGCGT CGAACATTGC
GCCGCTCTGC GAATTCCGGG CTCCGGCGGG ATCGGTTCGG TCGCCTCGCG TTTTTTGCAG
TCCTGCGGCA AGAACGCCGA CGAATTTGCG CCAAACGAAA TTTTGGCGCT CGCCGACCAG
GCCGTCGATC TTGTCACCCT GGCGGCGGCG TCGGTCCGGC CCGGAGGCTT TTCGCTGTCG
AGAAGCCGCG CGCTTTCGAT GCGTCGCGTC AAGGCTTTGG TTGAAGAGCG CCTGGCCGAT
CTCGAACTCG ACACGGCCAA AATCGCCCGT CTCGCCGGGC TCTCGGCGCG CTATCTCAAC
GGCCTTTTCG GCGATGAAGG GACTTCGATC ATGCGCTATG TCTGGTCCCG CAGGCTGGAG
AATTGCGCGA AGGATTTTTC GGATCCCCGT CGGGCGGGCG ATCCCCTGTC CGAAATCGCC
TTTCGCTGGG GGTTTAGCGA CGCGTCCCAC TTCAGCCGCG CATTCAAGCA GCGCTTCGGT
TGCGCGCCAA GGGAGTTCAG GCGACGCCGC TAG
|
|---|
| Protein sequence | MDALQTSNPA ASRDQRRPLR LSTNDIAPAE RSGWLRDVIC REYANVEVTS PTCQILSQDL
TIYPWDRSRL SVIRSSAVGL RRLPREPLLA GQDAYFVVVL LSGDYVLEQE GKEVVLQPGD
MTIYDATRPH KIHCPRDFSK LILAIPRLLL RERMAGVEHC AALRIPGSGG IGSVASRFLQ
SCGKNADEFA PNEILALADQ AVDLVTLAAA SVRPGGFSLS RSRALSMRRV KALVEERLAD
LELDTAKIAR LAGLSARYLN GLFGDEGTSI MRYVWSRRLE NCAKDFSDPR RAGDPLSEIA
FRWGFSDASH FSRAFKQRFG CAPREFRRRR
|
|---|
| |