| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_3481 |
|---|
| Symbol | |
|---|
| ID | 7092505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | + |
|---|
| Start bp | 3822981 |
|---|
| End bp | 3824477 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643466772 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_002363732 |
|---|
| Protein GI | 217979585 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA TAGCGATCCG CGAAGCAAGC TCCTCCGAAA CTGCGCGCCG GAGCGAGCCG
CAGGAGCCGC TCTGGACCGG GCTTGGCCTT GTCGCGCCGC TCGAAGCGCG GATCAGCGGC
GGCGCGCCTC GGCGCGGCGC GACGGGCGTC TCCATCGATA CGCGCACGCT TTGCCCGGGC
GATCTCTTCT TTGCGATCAG CGGCTTCAAC AGCGACGGGC ATGATTATGT CGCGGCCGCG
CTGGAAAAGG GCGCCCTCGC CGCCGTCGTC GACGAGGCTC ATGCGGAGTC GCTTGCGCGC
CTCGGCCCGC TTTATGTCGT GCGCGACGAC GTTCTCGCCG CCCTCGAACG CCTCGGCGTC
GCCGCCAGGG CGCGGACGCG CGCGCGCATC GCCGCCGTCA CCGGCTCGGT GGGCAAGACC
TCGACCAAGG AGGCGTTGCG CCTCGCCCTT TCCGCGGCGG GGCGAACCCA CGCCTCGGTC
GCCTCTTATA ATAATCATTG GGGGGTGCCG CTGACGCTCG CCCGCATGCC AAGGCAGACA
GAGTTCGGCG TGTTCGAAAT CGGCATGAAC CATCAAGGTG AAATCACGCC GCTGACGCGC
ATGGTGCGCC CGCATGTGGC GATCATCACC ACCGTCGCTC CGGTGCATAT GGAAAATTTC
ACTGGCGTCG AGGCGATCGC CGACGCCAAG GCGGAGATTT TCGCGGGGCT GGAGCCGGGC
GGCGTCGCCA TTCTGCCGGC CGACAATCCG CAGTTCGAGC GGCTTGCCGC TGCAGCGAAG
CGTTCGGCGG CGGGACTTGT GACGAGCTTC GGCGCGGACA AGCACGCCGA GGCCCGTCTT
CTGGACGTGC GCCTCGCCGC GGATCATTCC ATGGTCGAGG CCGATATTTG CGGACAATTG
CTGACCTATC GCCTCGGCGC ACCGGGGCGA CACCTTGCGA TGAATTCGCT CGCCGTGCTG
CTCGCCGCCA AGGCGCTTGG CGTCGATCCG CGCGAGGCAG CGCAGACGCT CGCCTCTTTC
GCCGCGCAGC CCGGCCGCGG CCAGAGGCTG GAGCTTCAGG CGCCCGATGG AGCCTTTACG
CTGATCGACG AGAGCTATAA CGCCAATCCG GCTTCGATGC GCGCCGCCTT CGATCTCGCC
GGCGCGCTGG CGCCTCCTTC GCCCGGACGG CGCGTCGCGG TCCTTGGCGA CATGCTGGAA
CTCGGGTCCC ACGCCGCCGA CATGCACGCG GGGCTCGCGC AGGATCTTGC CGCCAATCAT
TTCGACCTCG TCTTCGCCGC CGGGCCGCTC TGCAAGCATC TGTTCGACGC GCTGCCCGCC
GCGATGCGAG GGGAGTGGCG CGAAAACGCG CAGATGATCG CGCCGGCCGT GGCGGCCGCG
GTTCATGCCG GCGATCTCGT GATCGTCAAG GGATCGAACG GCTCGAAGAT GAGCGCCGTC
GTCGAAGCGC TGAAACACGC CGCAAGCAAC GGCTCAAACG AGGGGCGGAC CGCCTGA
|
|---|
| Protein sequence | MSEIAIREAS SSETARRSEP QEPLWTGLGL VAPLEARISG GAPRRGATGV SIDTRTLCPG
DLFFAISGFN SDGHDYVAAA LEKGALAAVV DEAHAESLAR LGPLYVVRDD VLAALERLGV
AARARTRARI AAVTGSVGKT STKEALRLAL SAAGRTHASV ASYNNHWGVP LTLARMPRQT
EFGVFEIGMN HQGEITPLTR MVRPHVAIIT TVAPVHMENF TGVEAIADAK AEIFAGLEPG
GVAILPADNP QFERLAAAAK RSAAGLVTSF GADKHAEARL LDVRLAADHS MVEADICGQL
LTYRLGAPGR HLAMNSLAVL LAAKALGVDP REAAQTLASF AAQPGRGQRL ELQAPDGAFT
LIDESYNANP ASMRAAFDLA GALAPPSPGR RVAVLGDMLE LGSHAADMHA GLAQDLAANH
FDLVFAAGPL CKHLFDALPA AMRGEWRENA QMIAPAVAAA VHAGDLVIVK GSNGSKMSAV
VEALKHAASN GSNEGRTA
|
|---|
| |