| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2253 |
|---|
| Symbol | |
|---|
| ID | 5104314 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 2153138 |
|---|
| End bp | 2154049 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640508147 |
|---|
| Product | spermine synthase / spermidine synthase |
|---|
| Protein accession | YP_001192315 |
|---|
| Protein GI | 146304999 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.158612 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTCG GTTGGAGCTG GCATATAGAG TGGCAATCCT CCTATGAATT TCATGGTCAT
CACATAGACC AAGTATTGGA AGATGTTACT ACCCAGTTTC AAAGGGTAAT GGTTGCTAAG
TTAACTAGGT TTGGGAAGTC GCTTATTATA GATGGGAAAG TTCAATCCAC CGTATCTGAC
GAGTATATAT ATCACGAAAC TCTAGTCCAT CCCCTTCTTC TCTCCCTAGA CAAACCTAAG
AGTGTGCTAA TACTAGGTGG AGGCGAAGGG GCCACATTAC GTGAGGTGCT CAAGCATGAG
TCTGTGAATA GGGCAGTCAT GGTGGATATA GACCAGGCGG TCATAGACTT CGCGAGGAAA
CACCTTACTG AGTGGCATAC CGGATCCTTT GATGATCCTA GGACTACGCT GGTTATTGAT
GATGCTCTGA GATATGTGGA AAAAACACAG GAAAAGTTTG ATGCTATTGT TCTAGATCTT
ACGGATCCTA TAATGGGTAA CTCATCGTAT AAATTATACA CGAAAGAGTT TTATGAAAAA
CTTTCCAGAC TGGTTGGTGA TGACGGAGGT ATCGTAACCC AAGCCACTTC GCCATCCTTT
AGTCTGGACA CGTTCTCTGT AATATATAAC ACACTTAGAT CTATATTCAG GAAGGTTTCA
GCATCGATAA CCTACGTTCC ATCATTCGAT GGACTCTGGG GATTCGTTTA TGCATCCAAT
AAGGTTACGC CAAGCCAACT GTCTCCTGAG AGTATAAACT CACTGATAGC GCAGAGAATA
AGGGGAAAAC TAAGGTACTA CGATGGGGAA ACCCACTCGA TGCTGTTTAG CATTCCCAAG
AACATAAGGG AAAAGTTATC TTCAGAGAAA AGGATATCGA CGGAGTCTAA CCCAGTTACT
GTCCCTGCTT GA
|
|---|
| Protein sequence | MEFGWSWHIE WQSSYEFHGH HIDQVLEDVT TQFQRVMVAK LTRFGKSLII DGKVQSTVSD
EYIYHETLVH PLLLSLDKPK SVLILGGGEG ATLREVLKHE SVNRAVMVDI DQAVIDFARK
HLTEWHTGSF DDPRTTLVID DALRYVEKTQ EKFDAIVLDL TDPIMGNSSY KLYTKEFYEK
LSRLVGDDGG IVTQATSPSF SLDTFSVIYN TLRSIFRKVS ASITYVPSFD GLWGFVYASN
KVTPSQLSPE SINSLIAQRI RGKLRYYDGE THSMLFSIPK NIREKLSSEK RISTESNPVT
VPA
|
|---|
| |