| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1874 |
|---|
| Symbol | |
|---|
| ID | 5104142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1817305 |
|---|
| End bp | 1818123 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640507760 |
|---|
| Product | shikimate dehydrogenase |
|---|
| Protein accession | YP_001191938 |
|---|
| Protein GI | 146304622 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.450629 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGGGTTT CGCTAAGCAA TGCTTGGGAG GTAATTGAAC TGAAGTGCAC GGAAATAGGG
CCTGATACCA GCCTTCTGGG CGTACTTGGG GAGAACATTA AGTATACCCT GTCCCCCAAG
ATACATAACT TCGCTTTCGA GAGGCTAGGG ATAAGGGCAG TTTACGTTAC CTTTGACGTC
TCAAGGGACA GGTTTCAGAG GGCTTTCCCA GGGCTGCTAG AGTTCACGTA TGGGTTGAAC
GTGACCATCC CCTACAAGGA GGCTGTAATG CCATTTCTGG ACTCGCTGTC GCCCGAGGCT
GAAAAGGTGG GGGCGGTAAA CACGATCCAT GGAGGAAGGG GGTATAACAC GGACTACCTA
GCAGTGAAGG GATTAGTTTC AGGAGTGGAA AGGGGTACTG CCCTAATCCT GGGAGCTGGG
GGTGCGGCCA AGGCTGCCTC CTTTGCCCTG GGGGAACTGG GTTTCGAGAT AATTGTACAG
AATAGGACCG AGACCCGTGG GATGGAGCTG GTCTCAAGGT TGAGGGAGGA GGGTATCTCG
GCCTCCTTCT CCAGGGCTTG CCAAGGGGAG TACAACGTGG TCGTTAACAC GATCCCTGAA
CCGGAGGCTG TACCCCTGGA GTGCGTGAGG GGAAAGATGG CGGTGGAGTT CGTGTATAAG
GAGGAAACCC CCTTTCTTAG AAGGGCGAGG GAACTGGGAA TGAGAGTGGT TGATGGCCTC
CAGATCCTGG TGAGGCAGGC CATGGAGGCT GAAAAAATTT GGTTTGGTAA ATCCCTCAAC
GACATAGAGG TGGTGAATTT CCTAAATGCC GGGAAATAG
|
|---|
| Protein sequence | MRVSLSNAWE VIELKCTEIG PDTSLLGVLG ENIKYTLSPK IHNFAFERLG IRAVYVTFDV
SRDRFQRAFP GLLEFTYGLN VTIPYKEAVM PFLDSLSPEA EKVGAVNTIH GGRGYNTDYL
AVKGLVSGVE RGTALILGAG GAAKAASFAL GELGFEIIVQ NRTETRGMEL VSRLREEGIS
ASFSRACQGE YNVVVNTIPE PEAVPLECVR GKMAVEFVYK EETPFLRRAR ELGMRVVDGL
QILVRQAMEA EKIWFGKSLN DIEVVNFLNA GK
|
|---|
| |