| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1779 |
|---|
| Symbol | |
|---|
| ID | 5104779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1722131 |
|---|
| End bp | 1722817 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640507677 |
|---|
| Product | TatD-related deoxyribonuclease |
|---|
| Protein accession | YP_001191858 |
|---|
| Protein GI | 146304542 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0084] Mg-dependent DNase |
|---|
| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTATATG ATGCCCACTG TCACTGTTCT GAACTAGACG GGAAATATAA CGTGGTAGTC
GCTGCGGTCT CCATGGACCT TAAGACCTCG ATGAAGACCC TTAACATGAA AGGGGTCCTA
CGCGGTGTCG GAATTCATCC ATGGAATGCT GGAAACGGTG AACTCGAGAG GGTCAAGGAA
CTCGTGGAAA GGGCAGACTT CATAGGAGAA GTTGGATTAG ATTACAGACT ATCTAAGGCA
AGTAGGGAGG TTCAGATCAA GTATTTCCAG GAGTTTCTCC TCCCAGATAA GACCGTGAAC
ATCCACGCCC TAGATGCCTG GGAGGATGCC TTCAATCTGG CGTTAAGACA TGGGGTAAAG
AGGGCGATAT TTCACTGGTA TACTGGCCCA CAAACCCTCC TCAAGGACAT TGAGGGAGCA
GGTTACTTCA TAACGATTAA CCCGTCTGTC ACCTTCCAGG AGAAGCACCA GAAAATTCTC
GACGTTGCCC CCCTGGAAAT AATCCTCACC GAAAGCGACG GAGGTTACGT GTACAGAGGA
AGACTTCTAG AGCCCAACAT GGTGAAGGAT GCACTGCAAT TCATTTCCAA GAGGAAGGGA
GTCGATGAGG GAGAACTTGA GAGAGTGATA GAGAGAAATT TTGTTAAAGC ATTTGGGACA
AGTTCTAATA TCCTCCCGCG AGAGTGA
|
|---|
| Protein sequence | MLYDAHCHCS ELDGKYNVVV AAVSMDLKTS MKTLNMKGVL RGVGIHPWNA GNGELERVKE
LVERADFIGE VGLDYRLSKA SREVQIKYFQ EFLLPDKTVN IHALDAWEDA FNLALRHGVK
RAIFHWYTGP QTLLKDIEGA GYFITINPSV TFQEKHQKIL DVAPLEIILT ESDGGYVYRG
RLLEPNMVKD ALQFISKRKG VDEGELERVI ERNFVKAFGT SSNILPRE
|
|---|
| |