| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1720 |
|---|
| Symbol | |
|---|
| ID | 5105083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1659564 |
|---|
| End bp | 1660883 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640507615 |
|---|
| Product | glutamyl-tRNA(Gln) amidotransferase subunit D |
|---|
| Protein accession | YP_001191799 |
|---|
| Protein GI | 146304483 |
|---|
| COG category | [E] Amino acid transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0252] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D |
|---|
| TIGRFAM ID | [TIGR00519] L-asparaginases, type I
[TIGR02153] glutamyl-tRNA(Gln) amidotransferase, subunit D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.744807 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAG GTTATAGGGG AAAAGCTCTA GAGTTACTTT CTTCCTTAGG AGCTGAGATA
GGTGACGTGT TACAGGTTTA TAACGATAAA GTTAGCGTGA AAGGAATCCT TATGCCCTCC
TATTCACGTG ATGACTCAGT AATAGTCCTT AAGCTCGACA ATGGATATAA CGCTGGGTTC
TCAGTAAACA AGGTTAAGGT AAGCCTACTT GAAAAGGGCA ATAGACCACA AGAAAGAAGT
GAACATCGAG AGTTACTTCC TGGAAAAGTT AAGATAATCA GCACGGGAGG CACAATTGTA
AGCAAGGTAG AGTACGAAAC AGGTGCAGTT AGACCTGCAC TCAGTACAGA GGAGATCATT
AGGTTCGTTC CGGAAATCCA GGAAATTACC TCAATCTCAG CTGAGATTCT TTTCAGCATC
CTCAGCGAGA ACATGAAACC AGAGTTCTGG GTTAAGATAG CTGAGGCTGT AAAGAGGGCC
TTTGATGAGG GAAGCGAGGG AGTCGTCGTG GCTCACGGAA CTGATACCAT GAGCTACACC
GCCGCCGCCT TAGCTTTCTC CATACAGCGT TTGCCTGGGC CCGTGGTACT TGTGGGTTCG
CAGAGGAGTA GCGATAGACC CAGCAGCGAC TCTGGGATCA ACTTGGTTTC ATCAGTTCTC
TTGGCGAAGG AAGCTCCCTT TGGTGAGGTT GTGGTGAACA TGCATGGAGA AAGTTCAGAC
ACCTACACGC TAGCCCACAG GGGAGTAAAG GTTAGGAAAA TGCATACTAG CAGGAGGGAT
GCGTTTCAGA GCATTAACGA TCATCCCTTA GCGAAAGTGC TTTGGAAGGA GAGGACTGTG
AAAGTGTTGA GGAATGATTA TTTGAGAAGG TCCGATGGAG TGGAACTCAA TCCAAAATTC
GAAAACAGGG TATTCCTCTT GAAATTCTAT CCAGGACTGA GACCAGACAT CGTGGATATT
CTCCTGTCCT CTGGTTACAG GGGCATAATA GTTGAGGGAA CTGGCCTGGG CCATACTTCC
TCCGACTTTC AAGAAGCTTT CAAGAGGGCA GTCAAGGAAG GGCTATTTGT AGGAATGACT
TCCCAGTGCC TGTTTGGGAG GGTAAACATG AACGTTTATC AGACTGGAAG GCTATTACAG
CAGTCTGGAG TAGTTCCGCT TGGGGATATG TTACCTGAAG TTGCCCTCGT TAAACTAATG
TGGGCTTTGG GTCAGACCTC GGATCTAGAG GAGGTTAAGC GAATCATGTT AACTAATCTA
GTTGGTGAGT ATAATCCAAG GCATTCCTTG GATCATTTCC CGAGGTGGAA ACATGAGTGA
|
|---|
| Protein sequence | MLEGYRGKAL ELLSSLGAEI GDVLQVYNDK VSVKGILMPS YSRDDSVIVL KLDNGYNAGF
SVNKVKVSLL EKGNRPQERS EHRELLPGKV KIISTGGTIV SKVEYETGAV RPALSTEEII
RFVPEIQEIT SISAEILFSI LSENMKPEFW VKIAEAVKRA FDEGSEGVVV AHGTDTMSYT
AAALAFSIQR LPGPVVLVGS QRSSDRPSSD SGINLVSSVL LAKEAPFGEV VVNMHGESSD
TYTLAHRGVK VRKMHTSRRD AFQSINDHPL AKVLWKERTV KVLRNDYLRR SDGVELNPKF
ENRVFLLKFY PGLRPDIVDI LLSSGYRGII VEGTGLGHTS SDFQEAFKRA VKEGLFVGMT
SQCLFGRVNM NVYQTGRLLQ QSGVVPLGDM LPEVALVKLM WALGQTSDLE EVKRIMLTNL
VGEYNPRHSL DHFPRWKHE
|
|---|
| |