| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1529 |
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| Symbol | |
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| ID | 5104057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1490387 |
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| End bp | 1492987 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640507416 |
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| Product | hypothetical protein |
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| Protein accession | YP_001191609 |
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| Protein GI | 146304293 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1361] S-layer domain |
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| TIGRFAM ID | [TIGR01451] conserved repeat domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.114366 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATT TCATAGTTTT ACTACTTATA ATGATATTCT TATCACCGCT CTCTTTTCTT
TTGGCTACTG CTACTCCTGC CTCTCCAACA GTTTCTGTCT TGGGATATGG TTGGGGTAGT
CCCAGTTCGC CCACGAGCGC CTATCCAGGA TATACTGACT TCCCATTCTA TGTGGAAATA
GGTGCAGTTG GTTCTGCGAC TCCACTCAGC GCATCCATTT CCTTCCCTTC AGGATCTCCG
TTTATTACAG TGGGAGGGAA TCAAGCAGGC GTTATCCAAG GAAGCGGATA TTACCTCGCC
ATCTTCTACT TAACCATTCC TAGCTCAGTA ACCCCCGGTT ATTACTCTGC AAAGGTCACA
GTGGACTATA GCGTTCCCAT AGCAGACCAG GTTTGCGTTG AAAGTAAAAC GTTCAATATT
CAGATTCCAG TGTCAGCTGT CGACTTTCCA ATACCTGTGG GAATTCAGGG AGGAACAAGT
GGGGTTTCGC AACCCTTGGT TACAGGAGAG GGAGCCTCGC CCTTAACCAT CTCGGTCTCA
AATCCCTCCA ACAACATAGT GGACAACGTT CTGGTTAACC TGACGCTCCC TTCAGGTTTG
ATGAGCGAGA CGGGAAAGAA GTTCCTTATA TTTACGATTC CCTCAATCCC TCCTCAGGAG
ACCATTCAAT CCACTCAGTT AGTTAACGTT ACGCAAAATG CTATCCCTGG TACCTATTCT
CTCAACTATT CAGTAACATT TACCAACTAC CTCGGATACA GGTATTACGC AACTAACTCC
AATATAACTT CAGGCAACGC CAACGTAACT CTGGTTAACA TACCCTTAAC CCTTACTATC
TATCCGAAAA CGCCAATAAC CTTCTACGTA ACCTCTACCT CAGCTACTCC CTCCTCGCTT
GTCTCTATTA CTTTACGGGC CAACTCGTCA TACAACGCAT TCATAGAATC CGTAACTCCA
CAGACTAGTT TAACCCTTCT CAGTTCTAAC TTCACGCCCA CGACATTTCA GGGAACTGCC
AACTTCAACT ACACATTTGA AGTCCCGCAA ACGCTAGCGC CAGGAGCTTA TCCCATAACC
TTCACAATCA CGTATGAGAT CTTCGGACAA CAGCAAGAAA CCGCCGTAAC CACCTTCGTA
CAGGTTAACT ATTACAACGC AATGCCTACC CTATCTGATC CTACCTGGTC CACGCTAGCT
TCTCCTGGGA CTGCGGGGGT TACGCTAACG TTTCTGCTTA CCAATCCACT TCCTTATCCC
ATTTCAGACG TTAATGTAAC AATTCTTCCA CCAGCGGGAA TGAGTTCAAC CTATATCTCA
TACGTCGTTC CCACGCTCTC AGCCTCAGGA CAGGGCATAA ACTATGCCCA AGTGCCCTTC
ACCATAACCT TAGCACAGAA CGTAACACCT GGGTATCATG AGATACCTTT CGTGGTAAGC
TACTTCAGTA GCTACGGTTT TCATAAAGTG AGATCCCAGA TACCCGTTTA TGTTTACCCG
CAGAGCCAGC TTCTTGCCTT AGTTAGTAAC GTCACAGTTT ATCAGGGAAC TCAGGCTGAA
TTACCCATTG TCTTGGTGAA TTATGATCCC GTACCAGTAT CTTCAGTTTC TGCAGAGTTG
AGGCTTACAG GTCTTAGCGT TGTGGGGTTC TCAAATCAGA CTTTTAACAT GGGTCCCAAT
TCTAACGCAA CAGTAGTTTT CACCATTTCC GCTCAGGGAG TCGGTGCAGG GAGCTATCCA
GCTACATTGA CCCTCGTGTA TAATTACGAG GGCGTTACCA AGACCGTAAC CTATACGATT
CCAATTAACG TGCTTCCAGC TCAAAATATA GTGGACGTCT CCATTACTCC AACTGAGGTT
TACTATGGTA CGATCAATAA TGTTACCGTA AGGCTAATCG ACACGGCTCA AACTCCGCTT
AATAATGTCG TACTAAAGTT GTTTGGACCA TCCTCTGAAT TTTCTCTATC CCAGAACACG
GTGGATATTG GGACCCTCTC TCCAGGTAAG AGTTATACCG TAACCTTGAA CCTGTTACCA
ACTGTTTCCT CAACTACACC ACTGCCCCTT TCTGTAGAGG TACAGTATCT CTTACCCGGA
AGTGGCGTCA TTACGCAGAG TTATAACTTC TCGTTGATAG CCACCGGACT AGTGGATCTG
GTTCTACAGC AACCCACAAT ATCGTTCTCA AACGGCACGC TTACAGTTAC CGGAGTTCTA
AATAATTTCG GCACAGCGTC AGCTAACTTC GTTACAGTAT ATGTGGATGG CAATTCCACT
TACATAGGAA GCGTACCGCC CAATAGCCCT ACACCCTTCT CGACAACGTT AGTTATACCC
TTCGCGGGTG GAAATACCTC TACAGCGAAA CCTCACCAAG TTAAGATAGT TGTGTCCTAC
GAGGACTCCA TATATCAAAC CCATAACTTG ACTTACGTTC TAAGCTTCTC ACCATCTGCG
ACCCATTTTA ATACCACGTT CACCAATTTC AGGCACTTCA GAAGTAGCAA TTCCCTTCTA
CCAGAAATCG TGATAGCTAT CCTCCTTGTA ATAGTTATAG TTCTGGCTAT CCTCTTAGTC
CTTAGGAAGG GGAAAAAGTG A
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| Protein sequence | MKNFIVLLLI MIFLSPLSFL LATATPASPT VSVLGYGWGS PSSPTSAYPG YTDFPFYVEI
GAVGSATPLS ASISFPSGSP FITVGGNQAG VIQGSGYYLA IFYLTIPSSV TPGYYSAKVT
VDYSVPIADQ VCVESKTFNI QIPVSAVDFP IPVGIQGGTS GVSQPLVTGE GASPLTISVS
NPSNNIVDNV LVNLTLPSGL MSETGKKFLI FTIPSIPPQE TIQSTQLVNV TQNAIPGTYS
LNYSVTFTNY LGYRYYATNS NITSGNANVT LVNIPLTLTI YPKTPITFYV TSTSATPSSL
VSITLRANSS YNAFIESVTP QTSLTLLSSN FTPTTFQGTA NFNYTFEVPQ TLAPGAYPIT
FTITYEIFGQ QQETAVTTFV QVNYYNAMPT LSDPTWSTLA SPGTAGVTLT FLLTNPLPYP
ISDVNVTILP PAGMSSTYIS YVVPTLSASG QGINYAQVPF TITLAQNVTP GYHEIPFVVS
YFSSYGFHKV RSQIPVYVYP QSQLLALVSN VTVYQGTQAE LPIVLVNYDP VPVSSVSAEL
RLTGLSVVGF SNQTFNMGPN SNATVVFTIS AQGVGAGSYP ATLTLVYNYE GVTKTVTYTI
PINVLPAQNI VDVSITPTEV YYGTINNVTV RLIDTAQTPL NNVVLKLFGP SSEFSLSQNT
VDIGTLSPGK SYTVTLNLLP TVSSTTPLPL SVEVQYLLPG SGVITQSYNF SLIATGLVDL
VLQQPTISFS NGTLTVTGVL NNFGTASANF VTVYVDGNST YIGSVPPNSP TPFSTTLVIP
FAGGNTSTAK PHQVKIVVSY EDSIYQTHNL TYVLSFSPSA THFNTTFTNF RHFRSSNSLL
PEIVIAILLV IVIVLAILLV LRKGKK
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