| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1418 |
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| Symbol | |
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| ID | 5104628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1384523 |
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| End bp | 1385857 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640507307 |
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| Product | Alpha-amylase |
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| Protein accession | YP_001191500 |
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| Protein GI | 146304184 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00043111 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00411269 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTAGCA AGGTAATAAT GGGCTTTGAG GTTCATCAAC CCTTCAGAAT CAGGAAAGAC
GCCTTCTGGA ATCCTAGGTT TAAGGGATCC CCGCAGGAGA GATACTTCGA CGATAAATTA
AACAGGGAAA TATTTGAGCG CGTGAGGGCC AAGTGCTACA TTCCCGCAAC AAACATCATC
CTTGAGGAGA TCGAGGCGGG AGAAGATGAG GGAAGGGAGG TCAAGTTCTT CTTCTCTGTG
TCTGGGACCC TGTTGGAACA GGCTGAGAGA TGGGGGAGGG ATTTTCTAGA TTTACTCGAA
TTGCTCTCGA GCACGCGAAA GGTCGAGTTC CTAGCTCAGA CTTACTATCA CTCCGTTACC
TCGCTGTGGG AGGATAGGAC AGAGTGGAGG GAACAGGTAA AGCTTCACGT TGAAACAGTT
AAGTCACTCT TAGGTCAGAC CCCAGTTACG TTCGAGAATA CCGAGCTACT CACTAGTCCC
GTGATAGTGG AGGAGGCAGA GAACATGGGT TTCAATGGTA TCATGATGGA GGGAAAGGAC
TCCGTGTTGA GGGGGAGATC ACCAAACTTC GTCTACAGGA GAAAGGGAGG TAAAATCTCG
ATCCTACCAA GAAACTTCAC CTTGAGTGAT GACGTCGCAT TCAGGTTCTC CAATCCCAAC
TGGGACCAGT ATCCCTTAAC CGCGGAGAAG TACTCCTCGT GGGTTAAGGC CTCCCCAGGT
CAGGTAGTCA CTATTTTCGT GGATTATGAG ACATTTGGAG AGCATCACTG GAAGGAGAGT
GGAATCCTGG AGTTCCTAAG ATGGTTGCCC AGGGAACTCA ACAGGGAGGG AGTGGAGATG
ACCCTACCAA GGGAGGTAGA GGGCAGTCCC TACTATGACC TTGAGGTTAG CGGAATATCC
TCATGGGCAG ACATCAGAAA GGATCACACA AGTTGGTTGG GTAACATAAT GCAGTGGGCC
TACGACGAGG CAGTTAGGAG ATCTGAGATG ACCTCGAAGG AACTAGGAGG AGAATTTCTA
AGGGCGTGGA GATACTTCAC CACGAGTGAT AACTACTACT ATTTGTTCAC TGAGGGTGGT
GGTCCAGGCG AGGTTCACTC GTATTTCAAC GCTTATAATT CCCCGATAGA TGCCTTCCTA
AACGAGTTCT ATGCCATTAA CTCCTTTCTT CATGACGAAC TTGAAAATCT AGGAATCAAG
AATGAGCCTT TCTTCTTCTA CAAGGATGGG AAGAGAGTTG GGGTAGCTTG GGATGAGAAC
CAGTTCATGG AAATAGTGAG GCGCGATGAA TCACTTAAGG ATCACCTGAA GTACTTGAAG
GAGTGGTTGC AATGA
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| Protein sequence | MTSKVIMGFE VHQPFRIRKD AFWNPRFKGS PQERYFDDKL NREIFERVRA KCYIPATNII
LEEIEAGEDE GREVKFFFSV SGTLLEQAER WGRDFLDLLE LLSSTRKVEF LAQTYYHSVT
SLWEDRTEWR EQVKLHVETV KSLLGQTPVT FENTELLTSP VIVEEAENMG FNGIMMEGKD
SVLRGRSPNF VYRRKGGKIS ILPRNFTLSD DVAFRFSNPN WDQYPLTAEK YSSWVKASPG
QVVTIFVDYE TFGEHHWKES GILEFLRWLP RELNREGVEM TLPREVEGSP YYDLEVSGIS
SWADIRKDHT SWLGNIMQWA YDEAVRRSEM TSKELGGEFL RAWRYFTTSD NYYYLFTEGG
GPGEVHSYFN AYNSPIDAFL NEFYAINSFL HDELENLGIK NEPFFFYKDG KRVGVAWDEN
QFMEIVRRDE SLKDHLKYLK EWLQ
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