| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1394 |
|---|
| Symbol | |
|---|
| ID | 5104604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1367036 |
|---|
| End bp | 1367659 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640507283 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001191476 |
|---|
| Protein GI | 146304160 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0272058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000428267 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGATATCTG ACTCGCAATT CAAAGATGTT TGCGGTAAGG TTAAGGCTCT CCTGTACTTT
GGCTCCTATA CTAGGGAGGA TTACGTAGAT GGAATTTCAG ATATTAACGT GATTGCAATT
ACCAACGACA AGAGCGTTCT CATGGACTTG GCCTCAATGG ATCTCTCTCC TGTCGTGATC
GATGAAGAAA CCTTAAACAA GTTATGTCAA GACGGAGATC CCCTATGTTA TTACGTTCTA
AATGACTCCA AACTCATATG TGGATCACTG CCCAATTTTA CATTTATTTT CACCGATAAG
ACGTGCAGTA AGCTCCTCCG TTACTCTAGA ACCCAGGCGA AAATGAGTCT TGAAGGAATA
GCGAGAAGAG ACGAAATATC CTCAGTCAAT AACTTGTACA GGGGTATAAG GTCGTTCATA
AGGTCCAAGT GTTGTACCAA AGGTAAAATC CCATTATCTG ACGAAGAGGT GATCGCGTGC
TGTAAGGGTA TAGGGAATGA TGAAATTTGT GAACTTTTCA GTAAGGTTAG GGAGTTAAGG
AGAAATAGGG AACCTGTTAC ATATTGGACA ATTAGAAGGT TCGTGAAGAT AATGGAGGTA
GAAGACAAGG ATTCATCGTT GTAG
|
|---|
| Protein sequence | MISDSQFKDV CGKVKALLYF GSYTREDYVD GISDINVIAI TNDKSVLMDL ASMDLSPVVI
DEETLNKLCQ DGDPLCYYVL NDSKLICGSL PNFTFIFTDK TCSKLLRYSR TQAKMSLEGI
ARRDEISSVN NLYRGIRSFI RSKCCTKGKI PLSDEEVIAC CKGIGNDEIC ELFSKVRELR
RNREPVTYWT IRRFVKIMEV EDKDSSL
|
|---|
| |