| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1152 |
|---|
| Symbol | |
|---|
| ID | 5103500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 1101284 |
|---|
| End bp | 1102138 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640507044 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001191237 |
|---|
| Protein GI | 146303921 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01877] CRISPR-associated endoribonuclease Cas6 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.184683 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATCG TAAAGGCCAG CCTTACCTTG ATTCCCACAA GGGACGTGAT CCTACCGCCG
GTGACCTCGA AAGTCCTGAA GTACCTTATC ATGTCGGGAG AGCTTTTCCC CTTCTTGAGG
GACCTGGTTA GTTCAAGGGA CAAACATAAA CCACTCTTTA TCTCGAACCT TGGCGTAAAC
GGGAGGAGGC TAGTCTTGAT GAAACCGGTC CACGTGTCTA GGGGTACCGC CCTGGACGCC
TTCATCTCCT ATCCTCTAAG GCCTGACGCG ATAACCCCAG TTAACGGAGT GTTCAACACG
CCGTACGGCG AGTTCCAGGT CACGCTTAAC TCCTTCATGG TCCTGGACGA GTTTCAGCCT
CCCCAGGGCA ACGTGGTCAG GGTAAACTTC GTATCGCCAG TTCTCCTCTC GTCGATGATA
GGTCTTCCAC CCTCTCTTAA CCCTAGGTTC AGAGGGAGGG GTTCCAACTT CACGATTCCG
TCTCCTGGCC TAATCATAGC GTCGGCCTAT AAGACGCATC AGGGGCTCAC GCGGAGGTTT
GACGACGTGA AGTCCTTTAA ACTTGCGGTC CTGGTGAATG CCCTCTCAAA GGTGATAAAC
TTCAGGATGA GGCCTGTCAC CGTCTCCCTA GGCGAGCGAG GCGACAAGGT GAGGAAGACC
AGGGGAGTCA AGGGATGGAT TGAGTTTGAG CTACCACCCG AGTTCAGAGG GACCATGAAG
TACCTGATGG TTGGGTCCTA TCTAGGAATT GGGAGGAGCA GAGGGATAGG CCTAGGGGAG
ATCTCTCTTG AGGTGAAGGA CCTAGGGGCC TCCTCAAAAG CTGACCTGAG TGGTGAGCAG
GAGCCCAGGT CTTAG
|
|---|
| Protein sequence | MEIVKASLTL IPTRDVILPP VTSKVLKYLI MSGELFPFLR DLVSSRDKHK PLFISNLGVN
GRRLVLMKPV HVSRGTALDA FISYPLRPDA ITPVNGVFNT PYGEFQVTLN SFMVLDEFQP
PQGNVVRVNF VSPVLLSSMI GLPPSLNPRF RGRGSNFTIP SPGLIIASAY KTHQGLTRRF
DDVKSFKLAV LVNALSKVIN FRMRPVTVSL GERGDKVRKT RGVKGWIEFE LPPEFRGTMK
YLMVGSYLGI GRSRGIGLGE ISLEVKDLGA SSKADLSGEQ EPRS
|
|---|
| |