| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1137 |
|---|
| Symbol | |
|---|
| ID | 5103485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1073299 |
|---|
| End bp | 1074216 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640507029 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001191222 |
|---|
| Protein GI | 146303906 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5551] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01877] CRISPR-associated endoribonuclease Cas6 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.19081 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACAGAA ACTTGGCCCT TCACGCCCCA CCCAAGTGCT CTTATTATCC GCGCTTGACA
TGTCAATTTA TGCAACTCAT GAAAATGACC TTCAACGTGA CGCCCCTTCA CGACGTGGTT
CTGCCACCCC TGTCCTCAAA GGTGTTGAAG TACCTGGTCC TATCTCAACA GGTTCTTCCG
TTCCTCGAGG AGCTTGTAAG GTCGAAGGAT AAGCAGAAGC CCCTCTTCAT TTCCAACCTT
GCCCTAGATG GGAAGAGGCT TTACTCCAGG GGAGAGCCGA TCACAGTGAA GGCGAAAACA
AGGTTAACGG GTTCGGTCAC TTTCCCCTTC TCCAAGGAGG CCTTTAACGT TGGGGGAGGG
AGGGTAAAGA CGGTTTACGG TGAGTACGAG ATTTCCCTGA AGGAGGTGTC CGTCCTAGAT
GAGACCCCCT CAACCTCGAC AAGAGGGAAT CTCAGGGTCT CCTTCCTGAC TCCAGCCCTC
CTTTGCTCCA AGATTTACCT CCCTCCCTTT CTCAGGGAGA AGTACAGGAG GAAGAAGATT
GGTTTCTCGC TGATCCCAAC CCCTGGTCTC GTCGTTGCAT ATGGGTATAG GCAGTACCTC
GCCCTCCTCG GGAAGACTGA CAGTTACGAG AACGACATAA AGACCTTTAA GCTCCTAGTT
ATGGCGAATG CCCTGTCCCG CGTCGTAGGG TATAGGCTTT ACCCCGAGAC GGTTGTGATT
GGGGAGGACG AGAAAGGCAG ATTAAGGCTA ACGAGGGGGG TGAAGGGTTG GATAGAGTTT
GACATCGTGG GGAAGCTGAA GGAAAGTGCG GCTAAGTACC TTGAGGTTGC CTCCTTCCTA
GGGATTGGGA GGAGTAGGGG GATTGGGCTA GGGGAGGTTC ACTTCAAGAT GGTCGAGAGG
GGAGAGAATA GTCACTGA
|
|---|
| Protein sequence | MHRNLALHAP PKCSYYPRLT CQFMQLMKMT FNVTPLHDVV LPPLSSKVLK YLVLSQQVLP
FLEELVRSKD KQKPLFISNL ALDGKRLYSR GEPITVKAKT RLTGSVTFPF SKEAFNVGGG
RVKTVYGEYE ISLKEVSVLD ETPSTSTRGN LRVSFLTPAL LCSKIYLPPF LREKYRRKKI
GFSLIPTPGL VVAYGYRQYL ALLGKTDSYE NDIKTFKLLV MANALSRVVG YRLYPETVVI
GEDEKGRLRL TRGVKGWIEF DIVGKLKESA AKYLEVASFL GIGRSRGIGL GEVHFKMVER
GENSH
|
|---|
| |