| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1109 |
|---|
| Symbol | |
|---|
| ID | 5103583 |
|---|
| Type | |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | Yes |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1037330 |
|---|
| End bp | 1039940 |
|---|
| Gene Length | 2611 bp |
|---|
| Protein Length | |
|---|
| Translation table | |
|---|
| GC content | 43% |
|---|
| IMG OID | 640725405 |
|---|
| Product | |
|---|
| Protein accession | |
|---|
| Protein GI | |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
|---|
| TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.624719 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTAA TGGTAAAGGA CGGAAAAACC TTGAATGTGA AGACCTTTGA CGTCAAGGAA
GAGGAGATAG ATGATTATAC CACAGTGCTC GAGTTACTCC TAAAGCTTAG GGAGGAGAGA
GATCCTAGCC TAGTCCTCCG CTATTCCTGT AGGATGGCAT TGTGCGGTTC TTGCGGAATG
GTGATCAATG GTAAACCAAG GCTGGCTTGC CTAACCAAGG TAAAAAGCCT TGGGCTGAAT
CCTTTTTCAT GACAATTGAA AACTTTTTAT ATTCGTCTAT TATCAGCTAA TTTTGTGGAG
AAACTACTGA GACCCAGGGA GGCTTGCCAA CTGCTCGGCA TTTCATACAC AACCTTGTTA
AGATGGATTA GGGAAGGAAA AATTAGGGCA ATAACAACTG AAGGCGGGAA GTACAGAATA
CCCTACGGCG AGGTGAAAAA ATACCTAGAA AGAAGGGAGG AAATAAGGGC AGTAATTTAC
GCAAGAGTAT CCTCAACAGA CCAAAAAGAG GATTTAGAGA GACAAATAAA CTACCTAACG
AACTACGCAA CAGCAAAAGG TTACAAGGCA ATAGAAATAA TAAAAGATAT TGGAAGCGGA
TTAAACACAC AAAGGAAAGG TTTACTCAGA CTATTCAAAC TAGTCGAGGA AAGAAGCGTC
GACGTCATAC TAATAACCTA CAAAGATAGG CTAACAAGAT TCGGATTTGA ATACCTTGAA
GAATTCTTCA CAACAATGGG TGTTAAGATT GAAGTAGTTT TCGGAGAAGA ACCAAAAGAT
TCTACACAAG AACTAGTTGA AGACTTAATC TCCATCATCA CATCATTCGC TGGAAAAATT
TACGGAATGA GAAGCCATAA AAAAACACTC CTAGTTCAAG GTGCAAAAAA ACTAATAGGT
GAGTTAAGTG GAGAGGACGG TGAAGTTAAG AGTCAAGGTT AATTACGCCA CCTACTCAGC
ACTCAAAGAA GTTGAGAAAG AGTATAGAGA GGTTCTTGAG GAGGCAGTAA ATTACGGGCT
TGCAAAGAAC ACAACGTCAT TCACTAGGAT TAAGGCTGGG ATTTACAAGA CTGAGAGGGA
GAAGCACAGG GACTTGCCAT CCCATTATAT TTACACCGCT TGTGAAGATG CCAGCGAGAG
GCTAGATAGC TTCAATAAGT TGAAGAAGAG AGGAAGGAGT TACACTGACA GACCGTCAGT
TAGGAGGGTT ACTGTTCATC TTGATGACCA CTTGTGGAAG TTCAGCCTCA GCGTGATTTC
AATTGCTACT AAGAGGGGTA GAGTTTTCAT TTCTCCAATC TTTCCAAAGA TCTTTTGGAG
GTATTATAAC GACAATTGGT TAATTGCTAG TGAGGCTAGG TTTAAACTGT TGAAGGGGAA
TGTTGTAGAG TTCTTCATAG TTTTTAAGAA GGATGTTAAA TCTTACGATC CAAGGGGTTT
TATTCCAGTT GATTTGAATG AGGGTTCAGT CTCTGTATTA ATTAATGGGA AGCCGATACT
TTTAGAGACT AACACTAGGA TGATTACTCT GGGTTATGAG TATAAAAGGA GGTCGATAAC
TAATGGTAGG TCTACTAAGG ATAGGGAGGT TAGGAGGAAG TTAAGGAAGT TGAGGGAGAG
GGATAAGAAG CTTGATGTTA GGAGGAAGTT TGCTAAGTTG ATTGTTAAGG AGGCTTTTGG
GAGTAGGAGT GCTATAGTCT TGGAGGATTT GCCAAAGAGA GTTCCGGAGC ATATGGTTAA
GGGCGTGAAG GATAAACAGC TTAGGTTGAG GATTTATCGT TCGGCATTTT CTTCAATGAA
AAATGCTATT GTTGAGAAGG CTAGGGAGTT TGGTGTTCCC GTAATCTTGG TTGATCCTTC
TTATACTTCT TCTATTTGCC TTGTTCACGG GTCGAAGATT ATTTATCAAC CCGATGGGGG
CTCTGCCCCA AGGGTTGGTG TTTGTGGGAA GGGAGGAGAG AGGTGGCATA GGGATGTTGT
TGCGTTATAT AATTTGAGGA AAAGAGCTGG AGATGTGAGC CCCGTGCCGT TGGGCTCGAA
GGAGTCCCAT GACCCACCTG TCGTTAAGGC TGGCAGGTGG TTGAGGGCTA AGTCCCTACA
CTTGATCATG ATTGAAGATA AAATGAGTGA AATGAAAGTG TAGGGACAAA CGGAGAAAAT
AATGGTTGAA CCCCTTAGAA ACTTACCAAC CATAAGAGGT CTAGTCCCCG ATCTTATCCC
GTTCTTCCAG AAGTACAGGT CTGTAACTCC CCATCTAATT GGAGATGAGG AGCAGGAGAG
GCCCACAAGG GCATATACCC AGACTGACAA TCAGGTTAAG AGATACCTAC AGTTCAACTA
CTGCATACAA TGCGGCCTAT GTTATTCTGC CTGCCCCATC GTTGCGACAA ACGAGAAGTT
CCCGGGACCT GCTGCAATAA ACGTGGCCTA CCGCTACTCT GCAGACTCAA GGGATAGGAA
TCCCCAGAGA GTTCTAAAGT TAGACACGCC AGAGGGAGTG TGGTCATGTA GAGTTGCAGG
TTCGTGTTCC TTCGTTTGTC CCAAGGGTGT TGATCCCTCC CTCGCCATAC AACTTGTTAA
ATCGTCTCTT CTTAGAGGTG GTAAACCGTG A
|
|---|
| Protein sequence | |
|---|
| |