| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0978 |
|---|
| Symbol | |
|---|
| ID | 5104528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 903919 |
|---|
| End bp | 904545 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640506878 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001191071 |
|---|
| Protein GI | 146303755 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.448202 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0688732 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGAAGGC CTGAGGATTA CGCGAACGAG AAGTTGGAAG AGTTCAAGAA GTTGTTTGGA
ACTTCACCGA ACCAGGTCCA TGACGCAAGG GTTGAGTTAA GGAAATACGC GGTTGTGGTT
GAGGCACTAT ACCCCCTTCA CATGGATTTT GACCTGTTGG ATAACTCGAG GGGCATACTA
AAGCTCCTGG GGAAGGTGAG GGATTACGAT GTCCACGGAT GTCCCCGGGT AGATAGGGAA
GAGGTGTTGA GGAGGGTCAG TGCAAGGTTA CCTAGGCTAA GGAGATTACC TAGGCTTTAC
GGTTCCAGGT TCCTGGTAGC TGAGAACCTC ATGAGAATTT ATGGCGATAT TCCCTTCGTG
AACGACTTCC ACGGAGTTAG AAAATTGTTG AGAAGGGCGA GATTTTTGGC AGAAAGTTTG
GGAATATTCA ACGACTCCCT AAAGGAGTTG GTTAAAACCA TGGGTAATGA AAGGGATAGA
ATGGCCCAGG AGGCATGCCA GGGGAAGATC CCCGTGCTGA ATCTGGACGT CTCCAGAATT
AAGGAGATTG GGAGGATGGA GGTAAGGGAG ATCCTACTGT CTGATCACGA GTTTAGGCAT
ATAAAGCAGA AGCTATCACA GTTTTAA
|
|---|
| Protein sequence | MRRPEDYANE KLEEFKKLFG TSPNQVHDAR VELRKYAVVV EALYPLHMDF DLLDNSRGIL
KLLGKVRDYD VHGCPRVDRE EVLRRVSARL PRLRRLPRLY GSRFLVAENL MRIYGDIPFV
NDFHGVRKLL RRARFLAESL GIFNDSLKEL VKTMGNERDR MAQEACQGKI PVLNLDVSRI
KEIGRMEVRE ILLSDHEFRH IKQKLSQF
|
|---|
| |